Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OPM66_RS16560 Genome accession   NZ_CP112860
Coordinates   3489547..3490365 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain EAB2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3484547..3495365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPM66_RS16545 pilE 3484764..3485189 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  OPM66_RS16550 pilY2 3485186..3485668 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  OPM66_RS16555 pilY1 3485681..3489535 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  OPM66_RS16560 pilX 3489547..3490365 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OPM66_RS16565 pilW 3490362..3491363 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  OPM66_RS16570 pilV 3491364..3491924 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  OPM66_RS16575 fimU 3491918..3492391 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OPM66_RS16580 ispH 3492561..3493511 (-) 951 WP_083028594.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OPM66_RS16585 gmk 3493634..3494263 (+) 630 WP_000015937.1 guanylate kinase -
  OPM66_RS16590 rpoZ 3494336..3494614 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OPM66_RS16595 - 3494653..3494782 (+) 130 Protein_3233 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=758417 OPM66_RS16560 WP_000149374.1 3489547..3490365(-) (pilX) [Acinetobacter baumannii strain EAB2]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=758417 OPM66_RS16560 WP_000149374.1 3489547..3490365(-) (pilX) [Acinetobacter baumannii strain EAB2]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993