Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   OPM66_RS16565 Genome accession   NZ_CP112860
Coordinates   3490362..3491363 (-) Length   333 a.a.
NCBI ID   WP_000079200.1    Uniprot ID   A0A9P3CZV1
Organism   Acinetobacter baumannii strain EAB2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3485362..3496363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPM66_RS16555 pilY1 3485681..3489535 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  OPM66_RS16560 pilX 3489547..3490365 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OPM66_RS16565 pilW 3490362..3491363 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  OPM66_RS16570 pilV 3491364..3491924 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  OPM66_RS16575 fimU 3491918..3492391 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OPM66_RS16580 ispH 3492561..3493511 (-) 951 WP_083028594.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OPM66_RS16585 gmk 3493634..3494263 (+) 630 WP_000015937.1 guanylate kinase -
  OPM66_RS16590 rpoZ 3494336..3494614 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OPM66_RS16595 - 3494653..3494782 (+) 130 Protein_3233 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35829.53 Da        Isoelectric Point: 5.7207

>NTDB_id=758418 OPM66_RS16565 WP_000079200.1 3490362..3491363(-) (pilW) [Acinetobacter baumannii strain EAB2]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNYWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=758418 OPM66_RS16565 WP_000079200.1 3490362..3491363(-) (pilW) [Acinetobacter baumannii strain EAB2]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACTACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.7

100

0.997