Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   ORT68_RS04125 Genome accession   NZ_CP111111
Coordinates   886815..887531 (-) Length   238 a.a.
NCBI ID   WP_001829999.1    Uniprot ID   C0LF82
Organism   Staphylococcus epidermidis strain KCTC 13172     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 881815..892531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORT68_RS04110 (ORT68_04110) - 883096..884049 (+) 954 WP_002457062.1 LacI family DNA-binding transcriptional regulator -
  ORT68_RS04115 (ORT68_04115) - 884309..885781 (+) 1473 WP_266196347.1 sucrose-6-phosphate hydrolase -
  ORT68_RS04120 (ORT68_04120) - 885788..886747 (+) 960 WP_002468351.1 carbohydrate kinase family protein -
  ORT68_RS04125 (ORT68_04125) agrA 886815..887531 (-) 717 WP_001829999.1 quorum-sensing response regulator AgrA Regulator
  ORT68_RS04130 (ORT68_04130) agrC 887548..888837 (-) 1290 WP_002457064.1 quorum-sensing sensor histidine kinase AgrC -
  ORT68_RS04135 (ORT68_04135) agrD 888862..889002 (-) 141 WP_002447513.1 cyclic lactone autoinducer peptide AgrD -
  ORT68_RS04140 (ORT68_04140) - 889008..889571 (-) 564 WP_002457915.1 accessory gene regulator AgrB -
  ORT68_RS04145 (ORT68_04145) hld 889888..889965 (+) 78 WP_002494082.1 delta-hemolysin -
  ORT68_RS04150 (ORT68_04150) - 890346..891131 (-) 786 WP_002469371.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27936.97 Da        Isoelectric Point: 5.6250

>NTDB_id=757913 ORT68_RS04125 WP_001829999.1 886815..887531(-) (agrA) [Staphylococcus epidermidis strain KCTC 13172]
MKIFVCEDDQRQREHMVSIIKNYIMIEEKPMELALATNDPYEVLEQSKELNDIGCYFLDIQLEADMNGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKMRIIDCLETAHTRLKLLSKESNVDTIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVINRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=757913 ORT68_RS04125 WP_001829999.1 886815..887531(-) (agrA) [Staphylococcus epidermidis strain KCTC 13172]
ATGAAAATTTTTGTTTGTGAAGATGACCAAAGACAAAGAGAACATATGGTATCAATCATTAAAAACTACATAATGATTGA
AGAAAAGCCAATGGAGTTAGCTTTAGCAACAAATGATCCTTATGAGGTCTTAGAGCAATCAAAAGAACTTAATGACATTG
GTTGTTACTTCCTTGATATTCAATTAGAAGCTGATATGAACGGTATTAAATTAGCCAGTGAAATTCGTAAACATGATCCT
GTTGGTAATATTATATTTGTAACCAGTCACAGTGAGCTGACTTATTTGACGTTTGTTTATAAAGTGGCTGCTATGGATTT
TATTTTTAAAGATGATCCATCTGAATTAAAAATGAGAATCATAGATTGTCTCGAAACAGCACATACACGACTCAAATTAT
TATCAAAAGAAAGTAATGTAGATACGATTGAGTTAAAGCGGGGAAGTAATTCAGTATACGTTCAATATGATGATATTATG
TTTTTTGAATCATCTACGAAATCTCATAGGCTCATTGCACATCTTGATAATCGACAAATTGAATTTTATGGAAATTTAAA
GGAATTAGCACAGCTTGATGAACGTTTCTTTAGATGTCATAACAGTTTTGTGATAAACAGGCATAATATTGAATCTATTG
ACTCAAAAGAACGTATTGTTTACTTTAAGAATGGCGAAAATTGTTTCGCTTCAGTACGTAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0LF82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.815

100

0.878
  comE/comE2 Streptococcus gordonii strain NCTC7865

35.178

100

0.374
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

35.178

100

0.374