Detailed information NTG0075754

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: PHLH3_RS11715
• Genome accession: NZ_AP021905
• Coordinates: 2497375..2498592 (+)
• Length: 405 a.a.
• NCBI ID: WP_173180318.1
• Uniprot ID: -
• Organism: Pseudomonas sp. Pc102
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2492375..2503592

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PHLH3_RS30350	-	2492820..2493320 (+)	501	WP_244863065.1	DUF3291 domain-containing protein	-
PHLH3_RS11695 (PHLH8_23110)	-	2493343..2494560 (+)	1218	WP_213629330.1	winged helix-turn-helix domain-containing protein	-
PHLH3_RS11700 (PHLH8_23120)	-	2494851..2496440 (+)	1590	WP_173180316.1	ABC-F family ATPase	-
PHLH3_RS11705 (PHLH8_23130)	-	2496620..2496886 (+)	267	WP_213629332.1	hypothetical protein	-
PHLH3_RS11710 (PHLH8_23140)	-	2496954..2497232 (-)	279	WP_044409048.1	peptidylprolyl isomerase	-
PHLH3_RS11715 (PHLH8_23150)	pilU	2497375..2498592 (+)	1218	WP_173180318.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
PHLH3_RS11720 (PHLH8_23160)	-	2498626..2499384 (-)	759	WP_244863020.1	transporter substrate-binding domain-containing protein	-
PHLH3_RS11725 (PHLH8_23170)	-	2499460..2500431 (-)	972	WP_213629333.1	DUF4431 domain-containing protein	-
PHLH3_RS11730 (PHLH8_23180)	-	2500589..2502544 (-)	1956	WP_213629335.1	acetoacetate--CoA ligase	-
PHLH3_RS11735 (PHLH8_23190)	-	2502652..2503566 (-)	915	WP_213629337.1	LysR family transcriptional regulator	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44698.07 Da
• Isoelectric Point: 6.4288

>NTDB_id=75754 PHLH3_RS11715 WP_173180318.1 2497375..2498592(+) (pilU) [Pseudomonas sp. Pc102]
MDLPSMLKVLASQDGSDLYLSTGAPPCAKFNGVLKPLGTDPLKPGDVARIAESIMDPEQRGEFDRELEMNLAISLPNIGR
FRINIFKQRNEVSIVARNIKLDIPKFEDLKLPEVLLKVVMEKRGLVLFVGGTGSGKSTSLAALIDYRNRNSGGHIITIED
PVEYVHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVRTSDGKRRAAVEVLLGTATISDLIKRGDFSSIKEIMEKSKALGMQTFDQAL
FDLVVEGSIQEEEAIKNADSANNLRLKLKLHRDGPGTRPTAAPTPPPAPTPQATPTQDAASWGLELKLEELPEDEPPPED
PGKHY

Nucleotide

• Length: 1218 bp

>NTDB_id=75754 PHLH3_RS11715 WP_173180318.1 2497375..2498592(+) (pilU) [Pseudomonas sp. Pc102]
ATGGATCTCCCCTCGATGCTCAAGGTTCTGGCCTCCCAGGATGGCTCGGACCTCTACCTGTCCACCGGTGCGCCGCCCTG
CGCCAAGTTCAACGGCGTGCTCAAGCCGCTGGGCACCGACCCGCTCAAGCCGGGCGACGTGGCGCGTATCGCCGAATCCA
TCATGGACCCGGAGCAGCGCGGCGAATTCGACCGCGAGCTGGAGATGAACCTGGCCATCTCCCTGCCCAACATCGGCCGC
TTCCGCATCAACATCTTCAAGCAGCGCAACGAGGTCTCCATCGTCGCGCGCAACATCAAGCTGGATATCCCGAAGTTCGA
GGACCTCAAGCTCCCCGAGGTGCTGCTCAAGGTGGTGATGGAAAAACGCGGCCTGGTGCTCTTCGTCGGCGGCACCGGCT
CGGGCAAGTCCACCTCCCTGGCCGCGCTGATCGACTACCGCAACCGCAACAGCGGCGGGCACATCATCACCATCGAGGAC
CCGGTGGAGTACGTGCACCGGCACAAGAAATCCATCATCAACCAGCGCGAGGTGGGGGTGGACACCCGCAGCTTCCACGC
CGCCCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGCGACCGCGAGACCATGGAACACG
CCCTGGCCTTCGCCGACACCGGCCACCTGGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCCGAGGAACGCCGGCCGCAGCTGCTCAACGACCTGGGCAACAACCTCAAGGCCTTCGTCTCCCAGCG
CCTGGTGCGCACCTCCGACGGCAAGCGCCGCGCGGCAGTGGAAGTGCTGCTGGGCACCGCCACCATCAGCGACCTGATCA
AGCGCGGCGACTTCAGCTCGATCAAGGAAATCATGGAGAAGTCCAAGGCCCTGGGCATGCAGACCTTCGACCAGGCGCTG
TTCGACCTGGTGGTGGAGGGCTCGATCCAGGAAGAGGAAGCGATCAAGAACGCCGACTCGGCCAACAACCTGCGCCTCAA
GCTCAAGCTGCACCGTGACGGCCCCGGCACCCGGCCCACCGCCGCACCCACCCCGCCCCCCGCACCGACGCCCCAGGCCA
CCCCGACCCAGGACGCCGCCAGCTGGGGCCTGGAGCTCAAGCTCGAAGAACTGCCCGAGGACGAGCCGCCGCCGGAAGAC
CCGGGCAAGCACTACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (111-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	55.372	89.63	0.496
pilU	Acinetobacter baylyi ADP1	53.125	86.914	0.462
pilU	Vibrio cholerae strain A1552	51.841	87.16	0.452