Detailed information NTG0075750

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PHLH3_RS08825
• Genome accession: NZ_AP021905
• Coordinates: 1885674..1887896 (+)
• Length: 740 a.a.
• NCBI ID: WP_213628933.1
• Uniprot ID: -
• Organism: Pseudomonas sp. Pc102
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1880674..1892896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PHLH3_RS08795 (PHLH8_17380)	-	1880761..1881054 (-)	294	WP_213628930.1	phosphodiesterase	-
PHLH3_RS08800 (PHLH8_17390)	-	1881059..1881646 (-)	588	WP_213628931.1	PilZ domain-containing protein	-
PHLH3_RS08805 (PHLH8_17400)	-	1881743..1882993 (+)	1251	WP_213628932.1	lipoprotein-releasing ABC transporter permease subunit	-
PHLH3_RS08810	lolD	1882995..1883677 (+)	683	Protein_1745	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
PHLH3_RS08815 (PHLH8_17420)	-	1883679..1884923 (+)	1245	WP_173173793.1	lipoprotein-releasing ABC transporter permease subunit	-
PHLH3_RS08820 (PHLH8_17430)	-	1884993..1885523 (-)	531	WP_173173795.1	DUF2062 domain-containing protein	-
PHLH3_RS08825 (PHLH8_17440)	comA	1885674..1887896 (+)	2223	WP_213628933.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PHLH3_RS08830 (PHLH8_17450)	exbB	1887969..1888604 (+)	636	WP_173173797.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PHLH3_RS08835 (PHLH8_17460)	-	1888601..1889044 (+)	444	WP_173173799.1	biopolymer transporter ExbD	-
PHLH3_RS08840 (PHLH8_17470)	lpxK	1889044..1890048 (+)	1005	WP_213628934.1	tetraacyldisaccharide 4'-kinase	-
PHLH3_RS08845 (PHLH8_17480)	-	1890090..1890275 (+)	186	WP_111262773.1	Trm112 family protein	-
PHLH3_RS08850 (PHLH8_17490)	kdsB	1890275..1891039 (+)	765	WP_213628935.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PHLH3_RS08855 (PHLH8_17500)	-	1891039..1891497 (+)	459	WP_213628936.1	low molecular weight protein-tyrosine-phosphatase	-
PHLH3_RS08860 (PHLH8_17510)	murB	1891494..1892513 (+)	1020	WP_213628937.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 79128.55 Da
• Isoelectric Point: 9.6009

>NTDB_id=75750 PHLH3_RS08825 WP_213628933.1 1885674..1887896(+) (comA) [Pseudomonas sp. Pc102]
MTWALVALGGGLAAVRFMPALPPTAWLLVAAVLGLALLAGRGRAAGLFLLGFAWGCCCAQWALDDRLDPSLDGETRWLEG
RVVGLPQRGSGVVRFELDDPQMPGAELPSRIRLSWYGGPQLRGGERWRLAVTLKRPRGLVNPHAFDYEAWLLARHIGASG
SVKAGKPLAPGNGPAAWRDRLRQGIEQVPAHGRNGGIAALVLGDGSGLVAADWRLLQDTGTVHLMVISGQHIALLAAVLY
GAVALLARLGLWPGRLPWLPCACALAFVGSLGYGLLAGFDVPVQRACLMTAIALLWRLRFRHLGVVRPLLVAFCVVLAAD
PLASLQAGFWLSFGAVALLILIFAGRMGVPPWWLSWWRAQWTMGLALSPLLLALALPISLSGPLANLVAVPWVSLVSVPL
SLLGTALQGVPWLGAGLLWLAGGSLELLFRLLAWIAAWVPAWQATAVPPWAWLLGMGGCLLLVLPAGVPVRVLGVALLLP
TLFPPVERPPWGRADIWLLDVGQGLSVLVRTREHALLYDTGARRGDFDMGERVVLPSLLGLGVRQLDQLLLSHADNDHAG
GAGAVLRGMPVARVVSGEPLRLPAALGAEACGNEAWEWDGVRLRTWRWEQARSGNDWSCVLSVEAHGERIHLTGDIGVQA
EAAWIASGEPLRADWLLAPHHGSASSSSAALIEAVSPRGALITRGSHNAFGHPHPSVVARYRASGVAIHDTAQSGALLIR
LGERDEVRGLRTQARFWREK

Nucleotide

• Length: 2223 bp

>NTDB_id=75750 PHLH3_RS08825 WP_213628933.1 1885674..1887896(+) (comA) [Pseudomonas sp. Pc102]
ATGACGTGGGCGTTGGTGGCGCTGGGCGGTGGCCTGGCCGCGGTGCGGTTCATGCCGGCGTTGCCCCCGACCGCCTGGCT
GCTCGTGGCGGCGGTACTGGGGCTGGCATTGCTGGCCGGGCGCGGGCGGGCGGCCGGTCTGTTCCTGCTGGGGTTCGCCT
GGGGCTGCTGCTGCGCCCAATGGGCCCTGGATGATCGGCTGGACCCATCCCTCGATGGCGAGACCCGCTGGCTGGAGGGG
CGGGTCGTCGGGCTGCCGCAACGGGGCAGCGGGGTGGTGCGCTTCGAGTTGGACGATCCGCAGATGCCAGGTGCCGAACT
GCCGTCGCGTATCCGCCTGTCCTGGTACGGCGGGCCACAGCTGCGCGGCGGGGAGCGCTGGCGACTGGCTGTGACCCTCA
AGCGCCCGCGCGGCCTGGTCAATCCGCATGCCTTCGATTACGAGGCCTGGCTCCTTGCCCGGCACATAGGCGCCAGCGGC
TCGGTGAAGGCCGGCAAGCCGTTGGCACCGGGCAATGGCCCCGCCGCCTGGCGTGACCGCCTGCGCCAGGGCATCGAGCA
GGTGCCGGCCCATGGGCGGAACGGCGGCATCGCGGCGCTGGTACTCGGCGACGGCTCGGGGCTGGTCGCTGCGGATTGGC
GCTTGCTGCAGGACACAGGGACCGTGCACCTGATGGTGATCTCCGGCCAGCACATCGCCTTGCTCGCCGCTGTGCTCTAC
GGCGCCGTCGCGCTGCTGGCGCGGCTCGGGCTCTGGCCCGGACGCCTGCCCTGGTTGCCCTGCGCCTGTGCCCTGGCGTT
CGTCGGATCACTGGGCTACGGCTTGCTGGCCGGCTTCGACGTGCCGGTGCAGCGCGCTTGCCTGATGACCGCCATCGCGC
TGCTCTGGCGCTTGCGTTTCCGCCACCTCGGGGTGGTCCGCCCGTTGCTGGTGGCCTTCTGCGTGGTGCTGGCGGCGGAT
CCGCTGGCCTCCCTGCAGGCAGGATTCTGGTTGTCCTTCGGCGCCGTGGCGTTGCTCATCCTGATTTTCGCCGGGCGGAT
GGGCGTGCCGCCCTGGTGGCTCAGCTGGTGGCGTGCGCAATGGACCATGGGGCTGGCGCTGTCACCCCTGCTGCTGGCGT
TGGCGCTGCCCATCAGCCTGAGTGGCCCGCTGGCCAACCTGGTCGCCGTGCCCTGGGTCAGCCTGGTCTCGGTGCCGCTT
TCCCTGCTCGGGACTGCGCTGCAGGGCGTGCCCTGGCTGGGCGCAGGGCTGCTGTGGCTGGCCGGCGGTTCGCTGGAGCT
GTTGTTCCGGCTGCTGGCCTGGATCGCCGCGTGGGTTCCGGCCTGGCAGGCGACGGCCGTTCCTCCGTGGGCCTGGCTGC
TGGGCATGGGCGGCTGCCTGTTGCTGGTTCTTCCGGCGGGCGTGCCGGTGCGCGTCCTGGGCGTGGCCCTGCTGTTGCCG
ACGTTGTTTCCTCCCGTGGAGCGGCCGCCCTGGGGGAGGGCGGACATCTGGCTGCTGGATGTCGGGCAGGGGCTGTCGGT
GCTGGTGCGGACCCGGGAGCACGCGCTGCTCTACGACACGGGCGCCCGGCGCGGCGACTTCGACATGGGCGAGCGGGTGG
TGCTGCCGAGCCTGCTGGGGCTGGGTGTGCGGCAGCTGGACCAGTTGCTGCTCAGCCATGCCGACAACGACCACGCCGGC
GGTGCCGGAGCGGTACTGCGCGGCATGCCGGTGGCGCGGGTGGTCAGCGGTGAGCCGCTGCGCCTGCCGGCTGCGCTGGG
CGCCGAGGCCTGCGGCAACGAGGCGTGGGAGTGGGACGGAGTGCGCCTGCGTACCTGGCGCTGGGAGCAGGCGCGCAGTG
GCAACGACTGGTCCTGTGTGCTCAGCGTCGAGGCGCACGGCGAGCGCATCCACCTGACCGGCGACATCGGTGTCCAGGCC
GAGGCCGCCTGGATCGCCAGCGGTGAGCCCCTGCGCGCCGACTGGCTGCTGGCACCGCACCACGGCAGTGCCAGCTCTTC
CTCCGCGGCGCTGATCGAGGCGGTGTCGCCCCGTGGTGCGTTGATCACCCGGGGCAGCCACAACGCCTTCGGCCATCCGC
ATCCGTCCGTCGTCGCCCGCTACCGTGCCTCTGGCGTCGCGATCCACGACACGGCGCAGTCCGGTGCGCTGCTGATCCGT
CTCGGCGAGCGTGACGAGGTGCGTGGACTGCGGACCCAGGCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-682)

• Competence protein (Competence) (200-465)

• Domain of unknown function (DUF4131) (DUF4131) (20-165)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.167	97.297	0.624
comA	Ralstonia pseudosolanacearum GMI1000	35.99	100	0.378