Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PHLH3_RS08830 Genome accession   NZ_AP021905
Coordinates   1887969..1888604 (+) Length   211 a.a.
NCBI ID   WP_173173797.1    Uniprot ID   -
Organism   Pseudomonas sp. Pc102     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1882969..1893604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHLH3_RS08810 lolD 1882995..1883677 (+) 683 Protein_1745 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  PHLH3_RS08815 (PHLH8_17420) - 1883679..1884923 (+) 1245 WP_173173793.1 lipoprotein-releasing ABC transporter permease subunit -
  PHLH3_RS08820 (PHLH8_17430) - 1884993..1885523 (-) 531 WP_173173795.1 DUF2062 domain-containing protein -
  PHLH3_RS08825 (PHLH8_17440) comA 1885674..1887896 (+) 2223 WP_213628933.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PHLH3_RS08830 (PHLH8_17450) exbB 1887969..1888604 (+) 636 WP_173173797.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PHLH3_RS08835 (PHLH8_17460) - 1888601..1889044 (+) 444 WP_173173799.1 biopolymer transporter ExbD -
  PHLH3_RS08840 (PHLH8_17470) lpxK 1889044..1890048 (+) 1005 WP_213628934.1 tetraacyldisaccharide 4'-kinase -
  PHLH3_RS08845 (PHLH8_17480) - 1890090..1890275 (+) 186 WP_111262773.1 Trm112 family protein -
  PHLH3_RS08850 (PHLH8_17490) kdsB 1890275..1891039 (+) 765 WP_213628935.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PHLH3_RS08855 (PHLH8_17500) - 1891039..1891497 (+) 459 WP_213628936.1 low molecular weight protein-tyrosine-phosphatase -
  PHLH3_RS08860 (PHLH8_17510) murB 1891494..1892513 (+) 1020 WP_213628937.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22976.18 Da        Isoelectric Point: 6.7295

>NTDB_id=75751 PHLH3_RS08830 WP_173173797.1 1887969..1888604(+) (exbB) [Pseudomonas sp. Pc102]
MWELVKAGGWMMLPIILSSIAATAIIVERLWTLRANRIAPPQLLGQVWRMVKDKQLNAQKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNTLGTIAAMGPLLGLLGTVFGMIEIFSGFMDNGMANAPALAGGIGKALITTAA
GLMVAIPAVFFHRFLLRRVDELVVAMEQEAIKLVEVTQGDREVDFAEEAKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=75751 PHLH3_RS08830 WP_173173797.1 1887969..1888604(+) (exbB) [Pseudomonas sp. Pc102]
GTGTGGGAGCTGGTCAAAGCAGGCGGCTGGATGATGCTGCCTATCATTCTGAGTTCCATCGCAGCCACCGCCATCATTGT
GGAGCGCCTGTGGACGCTCCGTGCCAATCGCATCGCACCGCCGCAATTGCTCGGCCAGGTGTGGCGCATGGTCAAGGACA
AGCAGCTCAACGCGCAGAAGCTCAAGGAACTGCGTGCCTCGTCCCCGCTGGGCGAGATTCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCATCCCGCGTCATCCATGAGCTGGAGCGCTACCT
CAATACCCTGGGCACCATCGCCGCCATGGGCCCGCTGCTGGGCCTTTTGGGTACCGTGTTCGGGATGATCGAGATCTTCA
GCGGCTTCATGGACAACGGCATGGCGAACGCCCCGGCCCTGGCTGGCGGTATCGGCAAGGCGCTGATCACCACCGCGGCG
GGCCTGATGGTCGCCATCCCCGCCGTGTTCTTCCACCGTTTCCTGCTGCGTCGTGTCGACGAGCTGGTGGTGGCCATGGA
GCAGGAGGCGATCAAGCTGGTGGAAGTGACCCAGGGCGATCGTGAAGTGGACTTCGCAGAGGAAGCCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.609

98.104

0.81

Multiple sequence alignment