Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | OQ358_RS00630 | Genome accession | NZ_CP110922 |
| Coordinates | 106353..106835 (+) | Length | 160 a.a. |
| NCBI ID | WP_058085720.1 | Uniprot ID | - |
| Organism | Listeria monocytogenes strain 11-04869 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 91839..133764 | 106353..106835 | within | 0 |
Gene organization within MGE regions
Location: 91839..133764
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OQ358_RS00480 (OQ358_00480) | - | 91839..93041 (-) | 1203 | WP_003734959.1 | site-specific integrase | - |
| OQ358_RS00485 (OQ358_00485) | - | 93107..93847 (-) | 741 | WP_003734960.1 | hypothetical protein | - |
| OQ358_RS00490 (OQ358_00490) | - | 93869..94591 (-) | 723 | WP_003727738.1 | hypothetical protein | - |
| OQ358_RS00495 (OQ358_00495) | - | 94607..94825 (-) | 219 | WP_003727739.1 | zinc-ribbon domain-containing protein | - |
| OQ358_RS00500 (OQ358_00500) | - | 94848..95339 (-) | 492 | WP_003727740.1 | ImmA/IrrE family metallo-endopeptidase | - |
| OQ358_RS00505 (OQ358_00505) | - | 95372..95677 (-) | 306 | WP_003727741.1 | helix-turn-helix transcriptional regulator | - |
| OQ358_RS00510 (OQ358_00510) | - | 95803..96045 (+) | 243 | WP_003727742.1 | helix-turn-helix transcriptional regulator | - |
| OQ358_RS00515 (OQ358_00515) | - | 96049..96333 (+) | 285 | WP_003735006.1 | hypothetical protein | - |
| OQ358_RS00520 (OQ358_00520) | - | 96359..96640 (+) | 282 | WP_003727747.1 | hypothetical protein | - |
| OQ358_RS00525 (OQ358_00525) | - | 96672..96833 (+) | 162 | WP_003735005.1 | hypothetical protein | - |
| OQ358_RS00530 (OQ358_00530) | - | 96826..97068 (-) | 243 | WP_003727749.1 | hypothetical protein | - |
| OQ358_RS00535 (OQ358_00535) | - | 97076..97150 (+) | 75 | Protein_105 | hypothetical protein | - |
| OQ358_RS00540 (OQ358_00540) | - | 97132..97911 (+) | 780 | WP_061671714.1 | phage antirepressor KilAC domain-containing protein | - |
| OQ358_RS00545 (OQ358_00545) | - | 98033..98557 (+) | 525 | WP_061092555.1 | hypothetical protein | - |
| OQ358_RS00550 (OQ358_00550) | - | 98564..98749 (+) | 186 | WP_003731816.1 | helix-turn-helix domain-containing protein | - |
| OQ358_RS00555 (OQ358_00555) | - | 98765..98953 (+) | 189 | WP_003734954.1 | gp45 family putative tail fiber system protein | - |
| OQ358_RS00560 (OQ358_00560) | - | 99186..100145 (+) | 960 | WP_077947796.1 | YqaJ viral recombinase family protein | - |
| OQ358_RS00565 (OQ358_00565) | - | 100145..100960 (+) | 816 | WP_003740960.1 | recombinase RecT | - |
| OQ358_RS00570 (OQ358_00570) | - | 100990..101916 (+) | 927 | WP_061092554.1 | hypothetical protein | - |
| OQ358_RS00575 (OQ358_00575) | - | 101913..102080 (+) | 168 | WP_010990198.1 | hypothetical protein | - |
| OQ358_RS00580 (OQ358_00580) | - | 102096..102377 (+) | 282 | WP_041918346.1 | hypothetical protein | - |
| OQ358_RS00585 (OQ358_00585) | - | 102374..103186 (+) | 813 | WP_003734949.1 | DNA adenine methylase | - |
| OQ358_RS00590 (OQ358_00590) | - | 103183..103815 (+) | 633 | WP_003734948.1 | DUF1642 domain-containing protein | - |
| OQ358_RS00595 (OQ358_00595) | - | 103812..104333 (+) | 522 | WP_031644380.1 | YopX family protein | - |
| OQ358_RS00600 (OQ358_00600) | - | 104460..104852 (+) | 393 | WP_061092564.1 | YopX family protein | - |
| OQ358_RS00605 (OQ358_00605) | - | 104849..105034 (+) | 186 | WP_003727764.1 | hypothetical protein | - |
| OQ358_RS00610 (OQ358_00610) | - | 105031..105321 (+) | 291 | WP_020830811.1 | hypothetical protein | - |
| OQ358_RS00615 (OQ358_00615) | - | 105507..105701 (+) | 195 | WP_020830812.1 | hypothetical protein | - |
| OQ358_RS00620 (OQ358_00620) | - | 105716..105943 (+) | 228 | WP_058085718.1 | ASCH/PUA domain-containing protein | - |
| OQ358_RS00625 (OQ358_00625) | - | 105955..106356 (+) | 402 | WP_058085719.1 | hypothetical protein | - |
| OQ358_RS00630 (OQ358_00630) | ssbA | 106353..106835 (+) | 483 | WP_058085720.1 | single-stranded DNA-binding protein | Machinery gene |
| OQ358_RS00635 (OQ358_00635) | - | 106856..107047 (+) | 192 | WP_003734994.1 | hypothetical protein | - |
| OQ358_RS00640 (OQ358_00640) | - | 106992..107396 (+) | 405 | WP_015987089.1 | DUF1064 domain-containing protein | - |
| OQ358_RS00645 (OQ358_00645) | - | 107400..107783 (+) | 384 | WP_015987090.1 | DUF2481 family protein | - |
| OQ358_RS00650 (OQ358_00650) | - | 107913..108077 (+) | 165 | WP_015987092.1 | hypothetical protein | - |
| OQ358_RS00655 (OQ358_00655) | - | 108096..108530 (+) | 435 | WP_015987093.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| OQ358_RS00660 (OQ358_00660) | - | 108891..109454 (+) | 564 | WP_134056131.1 | hypothetical protein | - |
| OQ358_RS00665 (OQ358_00665) | - | 109551..109736 (+) | 186 | WP_015987095.1 | hypothetical protein | - |
| OQ358_RS00670 (OQ358_00670) | - | 109778..110320 (+) | 543 | WP_015987044.1 | terminase small subunit | - |
| OQ358_RS00675 (OQ358_00675) | - | 110289..111620 (+) | 1332 | WP_061092535.1 | PBSX family phage terminase large subunit | - |
| OQ358_RS00680 (OQ358_00680) | - | 111633..113132 (+) | 1500 | WP_003743397.1 | phage portal protein | - |
| OQ358_RS00685 (OQ358_00685) | - | 113138..114277 (+) | 1140 | WP_003734943.1 | phage minor capsid protein | - |
| OQ358_RS00690 (OQ358_00690) | - | 114356..114946 (+) | 591 | WP_003734944.1 | phage scaffolding protein | - |
| OQ358_RS00695 (OQ358_00695) | - | 114946..115947 (+) | 1002 | WP_003734945.1 | major capsid protein | - |
| OQ358_RS00700 (OQ358_00700) | - | 115966..116361 (+) | 396 | WP_003734946.1 | hypothetical protein | - |
| OQ358_RS00705 (OQ358_00705) | - | 116361..116723 (+) | 363 | WP_003743399.1 | putative minor capsid protein | - |
| OQ358_RS00710 (OQ358_00710) | - | 116723..117061 (+) | 339 | WP_003743401.1 | minor capsid protein | - |
| OQ358_RS00715 (OQ358_00715) | - | 117061..117468 (+) | 408 | WP_003743402.1 | minor capsid protein | - |
| OQ358_RS00720 (OQ358_00720) | - | 117471..117908 (+) | 438 | WP_003735047.1 | hypothetical protein | - |
| OQ358_RS00725 (OQ358_00725) | - | 117838..118170 (+) | 333 | WP_074384949.1 | Ig-like domain-containing protein | - |
| OQ358_RS00730 (OQ358_00730) | - | 118223..118645 (+) | 423 | WP_003743404.1 | phage tail assembly chaperone | - |
| OQ358_RS00735 (OQ358_00735) | - | 118651..119256 (+) | 606 | WP_021496958.1 | bacteriophage Gp15 family protein | - |
| OQ358_RS00740 (OQ358_00740) | - | 119267..124633 (+) | 5367 | WP_061092536.1 | tape measure protein | - |
| OQ358_RS00745 (OQ358_00745) | - | 124630..125457 (+) | 828 | WP_003743410.1 | phage tail family protein | - |
| OQ358_RS00750 (OQ358_00750) | - | 125472..126494 (+) | 1023 | WP_015987056.1 | phage tail protein | - |
| OQ358_RS00755 (OQ358_00755) | - | 126495..127520 (+) | 1026 | WP_010990226.1 | hypothetical protein | - |
| OQ358_RS00760 (OQ358_00760) | - | 127517..128584 (+) | 1068 | WP_010990227.1 | BppU family phage baseplate upper protein | - |
| OQ358_RS00765 (OQ358_00765) | - | 128581..128922 (+) | 342 | WP_003759716.1 | hypothetical protein | - |
| OQ358_RS00770 (OQ358_00770) | - | 128923..129069 (+) | 147 | WP_012581446.1 | XkdX family protein | - |
| OQ358_RS00775 (OQ358_00775) | - | 129110..129415 (+) | 306 | WP_003733957.1 | hypothetical protein | - |
| OQ358_RS00780 (OQ358_00780) | - | 129412..129696 (+) | 285 | WP_223196393.1 | phage holin | - |
| OQ358_RS00785 (OQ358_00785) | - | 129696..130646 (+) | 951 | WP_058085736.1 | N-acetylmuramoyl-L-alanine amidase family protein | - |
| OQ358_RS00790 (OQ358_00790) | - | 130791..131492 (+) | 702 | WP_003743979.1 | DUF3800 domain-containing protein | - |
| OQ358_RS00795 (OQ358_00795) | - | 132252..132881 (+) | 630 | WP_058085743.1 | hypothetical protein | - |
| OQ358_RS00800 (OQ358_00800) | - | 133328..133561 (+) | 234 | WP_058085737.1 | hypothetical protein | - |
| OQ358_RS00805 (OQ358_00805) | - | 133558..133764 (+) | 207 | WP_058085738.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17735.60 Da Isoelectric Point: 4.8192
>NTDB_id=756954 OQ358_RS00630 WP_058085720.1 106353..106835(+) (ssbA) [Listeria monocytogenes strain 11-04869]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRPFKNAQGEQEADFINCVVWRKPAENAANFLKKGSMAGVDGRVQTR
NYEDSDGKRVFVTEVVAETVQFLEPKNINAEGATSNNYQNQANYSNNNKTSSYRADTSQKSDSFADEGKAIDINEDDLPF
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRPFKNAQGEQEADFINCVVWRKPAENAANFLKKGSMAGVDGRVQTR
NYEDSDGKRVFVTEVVAETVQFLEPKNINAEGATSNNYQNQANYSNNNKTSSYRADTSQKSDSFADEGKAIDINEDDLPF
Nucleotide
Download Length: 483 bp
>NTDB_id=756954 OQ358_RS00630 WP_058085720.1 106353..106835(+) (ssbA) [Listeria monocytogenes strain 11-04869]
ATGATGAACCGTGTAGTGCTTGTAGGACGATTAACGAAAGACCCTGAATTACGTTACACTCCAGCTGGAGTAGCTGTTGC
GACTTTTACGCTAGCAGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGATTTCATTAATTGTGTTGTTT
GGCGTAAACCAGCGGAAAACGCAGCTAATTTCTTGAAAAAAGGAAGCATGGCAGGCGTTGATGGACGTGTTCAAACTCGT
AATTATGAGGACAGCGACGGTAAACGCGTTTTCGTTACTGAGGTAGTTGCTGAAACAGTTCAATTCTTAGAGCCTAAAAA
TATCAACGCAGAAGGCGCTACATCGAATAATTATCAAAACCAAGCTAATTATTCAAATAACAATAAAACAAGCTCATATC
GAGCAGATACGAGTCAGAAGAGTGATTCATTTGCAGACGAAGGCAAGGCGATTGATATTAATGAAGATGATTTGCCATTT
TGA
ATGATGAACCGTGTAGTGCTTGTAGGACGATTAACGAAAGACCCTGAATTACGTTACACTCCAGCTGGAGTAGCTGTTGC
GACTTTTACGCTAGCAGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGATTTCATTAATTGTGTTGTTT
GGCGTAAACCAGCGGAAAACGCAGCTAATTTCTTGAAAAAAGGAAGCATGGCAGGCGTTGATGGACGTGTTCAAACTCGT
AATTATGAGGACAGCGACGGTAAACGCGTTTTCGTTACTGAGGTAGTTGCTGAAACAGTTCAATTCTTAGAGCCTAAAAA
TATCAACGCAGAAGGCGCTACATCGAATAATTATCAAAACCAAGCTAATTATTCAAATAACAATAAAACAAGCTCATATC
GAGCAGATACGAGTCAGAAGAGTGATTCATTTGCAGACGAAGGCAAGGCGATTGATATTAATGAAGATGATTTGCCATTT
TGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.047 |
100 |
0.656 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.118 |
100 |
0.575 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
65.094 |
66.25 |
0.431 |