Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OQ460_RS07770 Genome accession   NZ_CP110853
Coordinates   1680250..1682505 (+) Length   751 a.a.
NCBI ID   WP_410021112.1    Uniprot ID   -
Organism   Pseudomonas sp. 16FHM2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1675250..1687505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQ460_RS07755 (OQ460_07710) - 1675671..1676660 (-) 990 WP_410021109.1 2-hydroxyacid dehydrogenase -
  OQ460_RS07760 (OQ460_07715) - 1676685..1679438 (-) 2754 WP_410021110.1 response regulator -
  OQ460_RS07765 (OQ460_07720) - 1679599..1680114 (-) 516 WP_410021111.1 DUF2062 domain-containing protein -
  OQ460_RS07770 (OQ460_07725) comA 1680250..1682505 (+) 2256 WP_410021112.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OQ460_RS07775 (OQ460_07730) exbB 1682581..1683216 (+) 636 WP_410021113.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OQ460_RS07780 (OQ460_07735) - 1683213..1683641 (+) 429 WP_410021114.1 ExbD/TolR family protein -
  OQ460_RS07785 (OQ460_07740) lpxK 1683641..1684651 (+) 1011 WP_410021115.1 tetraacyldisaccharide 4'-kinase -
  OQ460_RS07790 (OQ460_07745) - 1684675..1684860 (+) 186 WP_003174668.1 Trm112 family protein -
  OQ460_RS07795 (OQ460_07750) kdsB 1684857..1685621 (+) 765 WP_410021116.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OQ460_RS07800 (OQ460_07755) - 1685621..1686085 (+) 465 WP_410021117.1 low molecular weight protein-tyrosine-phosphatase -
  OQ460_RS07805 (OQ460_07760) murB 1686082..1687101 (+) 1020 WP_410021118.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 82008.02 Da        Isoelectric Point: 10.5054

>NTDB_id=756651 OQ460_RS07770 WP_410021112.1 1680250..1682505(+) (comA) [Pseudomonas sp. 16FHM2]
MRTGMFALALGLLALRFLPALPQVGWLLVLPVVVLMMLPFRTYPLAFFLLGLGWACLSAQWALDDRLVPQLDGQTRWVEG
RVTGLTQQSAGVVRFELSDSRSRKDKLPKLMRLVWHGGPPVHSGERWRLAVTLKRPSGLLNFHGVDREAWLLAQRVGATG
SVKDGQRLAPARYAWRDSVRQKLLAVDAQGREAGLAALVLGDGSGLAPEDWRILQDTGTVHLLVISGQHIGLLSGLVYGL
VAGLARYGGWPRRLPWLPWACGLAFAAALAYGLLAGFEVPVQRACVMVGLVLLWRLRFRHLGTWWPLLLALNAVLILEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGPWRVWQAWTRAQWLIAIGLFPLFLALGLPVSLSAPLANLFAVPWVSVVVLPLAL
LGTMLLAVPVLGNSLLWLAGGALNGLFQALAFLAGQLPAWIPAEVPNWLWLVSLIGAVLLLMPAGLPFRLLGWPMLMLAV
FAPREDIPDGQVEVVQLDVGQGLAIILRTRHHTLLYDAGPRFGDFDLGARVVLPSLRKAGIAQLDLMLLSHADADHAGGA
ASVARGLPVKRVVGGETEGGALFLEPQPCISGEQWQWDGVQFQLWQWSDARSGNQKSCVLQVQANGERLLLTGDIDRETE
RALLATPLAVSTDWLQVPHHGSRSSSSWPLLQRLAPRAVLLSRGHGNGFGHPHPQVLERYQQMGSAIYDSAEQGAVRFRL
GAADTPVTARSQRRFWRTPATERYQNHVPAT

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=756651 OQ460_RS07770 WP_410021112.1 1680250..1682505(+) (comA) [Pseudomonas sp. 16FHM2]
ATGCGCACAGGGATGTTTGCGCTCGCGTTGGGACTGCTCGCCTTGCGTTTCCTGCCGGCATTGCCGCAGGTCGGTTGGCT
GCTGGTCCTGCCGGTCGTCGTGTTGATGATGCTACCGTTTCGTACTTATCCGCTGGCCTTTTTTCTGCTGGGTCTTGGCT
GGGCCTGTCTCAGTGCGCAATGGGCGCTGGATGATCGGCTTGTCCCGCAACTGGACGGGCAGACACGCTGGGTGGAGGGA
CGTGTCACGGGGCTTACGCAGCAGAGTGCCGGTGTGGTGCGTTTCGAGCTAAGCGACAGCCGGTCGCGCAAAGACAAGCT
GCCTAAGCTCATGCGGCTGGTCTGGCATGGGGGGCCACCGGTTCACAGCGGCGAGCGCTGGCGTCTGGCCGTCACTCTCA
AACGACCGTCCGGGTTGCTCAATTTCCATGGGGTTGACCGGGAAGCCTGGCTGTTGGCGCAACGGGTGGGTGCGACGGGT
TCGGTCAAGGATGGCCAGCGGCTGGCCCCAGCCCGCTATGCCTGGCGTGATTCGGTCCGCCAGAAGCTACTGGCCGTGGA
CGCTCAAGGTCGCGAGGCGGGGCTGGCTGCGCTGGTTCTGGGTGACGGTTCGGGTCTGGCACCCGAGGATTGGCGTATTT
TGCAAGACACGGGCACCGTGCATCTGTTGGTCATTTCCGGCCAGCACATCGGACTATTGTCGGGGCTGGTCTACGGCTTG
GTTGCCGGATTGGCCCGTTATGGAGGCTGGCCAAGACGCTTGCCCTGGCTACCCTGGGCCTGTGGCCTGGCATTTGCCGC
TGCACTGGCTTATGGCTTGTTGGCAGGTTTCGAAGTACCTGTGCAGCGCGCATGCGTGATGGTCGGATTGGTGTTGCTGT
GGCGCCTGCGATTTCGCCATCTGGGTACCTGGTGGCCATTGTTGCTGGCGCTGAACGCCGTATTGATCCTGGAACCGCTG
GCCAGCCTGCAGCCGGGTTTCTGGTTGTCATTTGCTGCGGTGGCCGTGTTGGTGCTGGCGTTCGGTGGGCGCCTGGGGCC
TTGGCGTGTGTGGCAGGCGTGGACCCGCGCCCAGTGGTTGATTGCGATTGGGTTGTTTCCATTGTTCTTGGCGCTTGGCC
TGCCCGTCAGCTTGAGCGCGCCTTTGGCCAATCTGTTTGCCGTGCCCTGGGTCAGCGTGGTGGTACTGCCCCTGGCGTTG
CTGGGAACGATGTTGCTGGCGGTGCCGGTGCTGGGCAACAGTTTGCTGTGGTTGGCGGGAGGCGCGCTGAATGGGCTGTT
CCAGGCGCTAGCGTTCCTCGCAGGGCAACTGCCGGCCTGGATCCCGGCGGAGGTCCCCAACTGGTTGTGGCTGGTGAGCT
TGATCGGGGCAGTATTGTTGTTGATGCCCGCTGGCCTTCCTTTTCGATTGTTGGGGTGGCCGATGCTGATGTTGGCAGTG
TTTGCGCCCCGCGAAGACATTCCTGATGGACAGGTCGAGGTAGTGCAACTGGATGTTGGCCAGGGCCTGGCGATCATACT
GCGTACCCGCCACCACACCCTGCTATATGACGCGGGACCGCGCTTTGGTGACTTTGATCTCGGCGCACGGGTGGTCCTGC
CTTCTTTGCGCAAGGCGGGCATTGCACAGTTGGACTTGATGTTGCTCAGCCATGCCGACGCCGATCACGCGGGAGGCGCA
GCGTCCGTCGCGCGTGGGCTGCCGGTCAAACGGGTGGTGGGTGGCGAGACCGAGGGGGGTGCGCTGTTTTTGGAACCTCA
ACCGTGTATCAGCGGTGAGCAATGGCAATGGGACGGCGTGCAATTCCAGCTGTGGCAATGGTCGGATGCCCGTAGCGGTA
ACCAGAAATCCTGCGTATTGCAGGTACAAGCCAATGGCGAGCGATTGCTGTTGACCGGCGATATCGACCGCGAAACCGAG
CGGGCCTTGCTGGCCACGCCCCTGGCGGTCAGCACTGATTGGTTGCAGGTGCCTCATCACGGCAGCCGCAGTTCGTCCTC
ATGGCCTCTGCTCCAGCGGCTGGCCCCCAGGGCAGTGCTGCTTTCCCGAGGACACGGCAACGGTTTCGGTCATCCGCACC
CTCAAGTGCTGGAGCGTTATCAGCAGATGGGCAGCGCCATTTATGACAGTGCCGAACAGGGCGCCGTGCGTTTTCGCCTG
GGAGCTGCCGATACGCCCGTCACGGCGCGTAGCCAGCGTCGGTTCTGGCGGACGCCGGCAACCGAGCGTTACCAAAACCA
CGTTCCTGCGACATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-674)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.249

95.739

0.567
  comA Ralstonia pseudosolanacearum GMI1000

35.615

100

0.374