Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OQ460_RS07775 Genome accession   NZ_CP110853
Coordinates   1682581..1683216 (+) Length   211 a.a.
NCBI ID   WP_410021113.1    Uniprot ID   -
Organism   Pseudomonas sp. 16FHM2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1677581..1688216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQ460_RS07765 (OQ460_07720) - 1679599..1680114 (-) 516 WP_410021111.1 DUF2062 domain-containing protein -
  OQ460_RS07770 (OQ460_07725) comA 1680250..1682505 (+) 2256 WP_410021112.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OQ460_RS07775 (OQ460_07730) exbB 1682581..1683216 (+) 636 WP_410021113.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OQ460_RS07780 (OQ460_07735) - 1683213..1683641 (+) 429 WP_410021114.1 ExbD/TolR family protein -
  OQ460_RS07785 (OQ460_07740) lpxK 1683641..1684651 (+) 1011 WP_410021115.1 tetraacyldisaccharide 4'-kinase -
  OQ460_RS07790 (OQ460_07745) - 1684675..1684860 (+) 186 WP_003174668.1 Trm112 family protein -
  OQ460_RS07795 (OQ460_07750) kdsB 1684857..1685621 (+) 765 WP_410021116.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OQ460_RS07800 (OQ460_07755) - 1685621..1686085 (+) 465 WP_410021117.1 low molecular weight protein-tyrosine-phosphatase -
  OQ460_RS07805 (OQ460_07760) murB 1686082..1687101 (+) 1020 WP_410021118.1 UDP-N-acetylmuramate dehydrogenase -
  OQ460_RS07810 (OQ460_07765) - 1687328..1687798 (+) 471 WP_410021119.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22936.08 Da        Isoelectric Point: 7.3615

>NTDB_id=756652 OQ460_RS07775 WP_410021113.1 1682581..1683216(+) (exbB) [Pseudomonas sp. 16FHM2]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPDHLLGQVWRWIKDKQLDKEKLKQLRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=756652 OQ460_RS07775 WP_410021113.1 1682581..1683216(+) (exbB) [Pseudomonas sp. 16FHM2]
GTGTGGGAATTGGTCAAGTCCGGCGGCTGGATGATGTTGCCGATCATTTTGAGTTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGTGTGACTCCGGACCACCTGCTGGGGCAGGTTTGGCGCTGGATCAAAGACA
AGCAGCTGGACAAGGAAAAGCTCAAGCAACTACGGGCCAACTCCCCCTTGGGCGAGATCCTCGCCGCCGGCCTTGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCTGCCCGAGTCATTCATGAGCTGGAGCGCTATAT
CAATGCCCTGGGCACCATCGCCGCCATGGCGCCGTTGCTCGGCTTGCTCGGTACGGTGCTGGGCATGATCGATATCTTCA
GCGCGTTCACCGGCTCGGGCATGACCACCAACGCTGCGGTACTGGCTGGGGGTATCTCCAAAGCCTTGATCACGACGGCT
GCGGGCCTGATGGTGGGTATCCCGGCGGTATTTTTCCACCGGTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCCATCAAGTTGGTAGAGGTAGTGCAAGGCGACCGTGATGTCGATCTGGTTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863