Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OQB64_RS03780 Genome accession   NZ_CP110809
Coordinates   855600..856937 (-) Length   445 a.a.
NCBI ID   WP_137983465.1    Uniprot ID   -
Organism   Pseudomonas syringae strain MUP32     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 850600..861937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQB64_RS03765 (OQB64_03765) - 850728..853931 (+) 3204 WP_024648770.1 PilC/PilY family type IV pilus protein -
  OQB64_RS03770 (OQB64_03770) - 853943..854344 (+) 402 WP_024648769.1 type IV pilin protein -
  OQB64_RS03775 (OQB64_03775) thiO 854370..855473 (+) 1104 WP_024648768.1 glycine oxidase ThiO -
  OQB64_RS03780 (OQB64_03780) pilR 855600..856937 (-) 1338 WP_137983465.1 sigma-54 dependent transcriptional regulator Regulator
  OQB64_RS03785 (OQB64_03785) pilS 856940..858532 (-) 1593 WP_024648766.1 ATP-binding protein Regulator
  OQB64_RS03790 (OQB64_03790) - 858522..858761 (-) 240 WP_032607804.1 PP0621 family protein -
  OQB64_RS03795 (OQB64_03795) - 858882..859904 (-) 1023 WP_003344571.1 outer membrane protein assembly factor BamD -
  OQB64_RS03800 (OQB64_03800) rluD 860054..861016 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OQB64_RS03805 (OQB64_03805) pgeF 861013..861741 (+) 729 WP_024648765.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49655.57 Da        Isoelectric Point: 6.2986

>NTDB_id=756308 OQB64_RS03780 WP_137983465.1 855600..856937(-) (pilR) [Pseudomonas syringae strain MUP32]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAGSV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=756308 OQB64_RS03780 WP_137983465.1 855600..856937(-) (pilR) [Pseudomonas syringae strain MUP32]
ATGAGCCAAAGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACGCGCAGCGCCCGCAACGTTGCCGAAGCCCACGACTGGCTGGCCCGCGAGCCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCTGATGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCCCACGGCAATGTGGATACCGCGATCAACGCGCTGAAGGCCGGGGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTCGGCAGGTTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGAAGCATCGACAACC
GCCTGCTGGGCGACTCTCTGGCAATGCGTACCTTGCGCAATCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCAGGCAGCGGCAAGGAGCTTGTAGCGAGGCTGATCCACGAGCAGGGCCCGCGCATCGACAAGCCGTT
CATACCGGTGAATTGCGGTGCCATCCCTTCCGAACTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCGCACACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCTATCCAGGAAAAATCCATTCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCGGAGGTCGCGGCAGGTCGGTTCCGTCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCTCATTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCGGGCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCCGCCAGCCCTCAGGAGAGCGATGGCCCGAGCTTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCGCTGGAAGAAACCCGCTGGAACCGCACCGCTGCAGCAGAAAG
GCTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.201

99.551

0.769
  pilR Acinetobacter baumannii strain A118

48.608

100

0.51
  luxO Vibrio cholerae strain A1552

37.613

99.775

0.375