Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OQB65_RS07700 Genome accession   NZ_CP110808
Coordinates   1686551..1688767 (+) Length   738 a.a.
NCBI ID   WP_074952261.1    Uniprot ID   -
Organism   Pseudomonas syringae strain MUP20     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1681551..1693767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQB65_RS07685 (OQB65_07685) - 1683890..1684513 (+) 624 WP_058444083.1 glutathione S-transferase -
  OQB65_RS07690 (OQB65_07690) - 1684697..1685629 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  OQB65_RS07695 (OQB65_07695) - 1685626..1686414 (+) 789 WP_266002894.1 ABC transporter permease -
  OQB65_RS07700 (OQB65_07700) comA 1686551..1688767 (+) 2217 WP_074952261.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OQB65_RS07705 (OQB65_07705) exbB 1688849..1689526 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OQB65_RS07710 (OQB65_07710) - 1689523..1689954 (+) 432 WP_003317468.1 ExbD/TolR family protein -
  OQB65_RS07715 (OQB65_07715) lpxK 1689954..1690949 (+) 996 WP_057407543.1 tetraacyldisaccharide 4'-kinase -
  OQB65_RS07720 (OQB65_07720) - 1690967..1691152 (+) 186 WP_103692876.1 Trm112 family protein -
  OQB65_RS07725 (OQB65_07725) kdsB 1691149..1691913 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OQB65_RS07730 (OQB65_07730) murB 1691948..1692967 (+) 1020 WP_057407542.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80313.62 Da        Isoelectric Point: 10.3197

>NTDB_id=756288 OQB65_RS07700 WP_074952261.1 1686551..1688767(+) (comA) [Pseudomonas syringae strain MUP20]
MRTGMIALALGLLALRFLPALPPIWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALSDRLAPRLDGQTLWVQG
KVVGLPSVAEGVVRFELEGAWSRRAKLPARIRVAWYGGQPVNSGERWRMAVKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDALRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRFLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWRWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQWLFVFLDAVAAALPAWLPSAVPIWAWWLSLLGALLLLLPKGVPMRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVSRVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPDGNPASCILSVDAGGERLLLAGDIDVSAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGAPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=756288 OQB65_RS07700 WP_074952261.1 1686551..1688767(+) (comA) [Pseudomonas syringae strain MUP20]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCGCTGCCGCCGATCTGGCTATT
GCTGCTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGCACCTATCCACTGGCGCTGTTCCTGCTCGGCTTCACCT
GGGCCTGCGTGTCGGCGCAGTGGGCGCTGAGTGACCGGTTGGCGCCGCGTCTCGATGGTCAGACGCTGTGGGTACAGGGC
AAGGTGGTCGGTTTGCCGAGTGTCGCCGAAGGTGTGGTGCGTTTCGAGCTGGAAGGCGCCTGGTCACGACGTGCCAAACT
GCCCGCGCGAATCCGGGTGGCCTGGTATGGCGGCCAGCCCGTTAATAGCGGGGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGGCCGGCCGGGCTGGTCAATCCCGATGCTTTCGACTATGAGGCCTGGCTGCTGGCGCAGCGCATCGGTGCGACCGGC
ACGGTGGTGGATGGTCAGCTATTGGCACCCGCGCGTGCCGCCTGGCGCGATGCCCTTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGGGAGGGCGGTCTGGCAGCGCTGGTGCTGGGCGATGGCTCAGGGCTATCGAGCACCGACTGGCAGGTGT
TGCAGGATACCGGCACTGTGCATTTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCCGGGGTGATTTACGCTTTG
GTCGCAGGCTTGGCGCGCTGGGGGCTGTGGCCACGCTTTTTGCCCTGGCTGCCGTGGGCGTGTGCGCTGGCGTTCAGCGC
TGCACTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCAGTCCGGCGCGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGCCATCTGGGCGTGGTCTGGCCCTTGTTGCTGTCCTTCAACGCGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCGGCGGTCGGCATTCTGATCCTGATTTTCAGTGGGCGTCTCGGCGC
CTGGCGCTGGTGGCAAAGCTGGACACGGGCGCAATGGCTGATCGCCGTTGGCTTGTTGCCGATTCTGCTGGCACTGAACC
TGCCGATCAGCCTCAGTGGGCCGTTTGCCAACCTGCTTGCCGTGCCTTGGGTCAGCGTGATCGTCCTGCCTCCGGCATTG
CTCGGAACGCTGTTGCTGCCAGTCCCTGTAGTCGGGGAAGGTCTGCTATGGCTGGCGGGCGGGGCGCTGCAGTGGCTGTT
CGTGTTCCTCGACGCGGTGGCTGCAGCATTGCCGGCCTGGCTGCCCAGTGCGGTGCCAATCTGGGCATGGTGGTTGAGTT
TGCTCGGGGCGTTACTCTTGTTGCTGCCCAAGGGCGTGCCCATGCGTCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGAATCAGTGCCTGAAGGCCAGGTAGACGTGTTGCAACTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGCACTCGCAATCACACCCTCCTGTATGACGCAGGTCCGCGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCAGGCGTCCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGCGGTGCG
GCGGCGGTTCATCAGGCCTTTCCGGTGAGCCGGGTGCTGGGTGGCGAGCTGGCCAGACTCGCCCCGCAACTCGACGCCCG
ATTGTGCGAGAGCGGTGCACGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ACCCCGCCTCCTGCATCCTCAGCGTCGACGCCGGGGGCGAGCGTCTGCTGCTGGCGGGCGATATCGACGTGAGCGCCGAG
CGCGCGGCAATCGACAGCGGGTTCGACCTGCGTGCCCACTGGTTGCAGTCGCCGCATCACGGCAGCCGGACCTCATCGTC
CAAAGCGTTTCTTCGCGCCGTCGCACCGGTCGGCGTGCTGATTTCCCGTGGTCGCAACAATGCGTTCGGTCACCCACACC
CGTTGGTCATGGCGCGCTATCGAGGCTTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCTGTGCGTCTGCAACTG
GGTACGTTCGGAGCGCCGCAGGCCGAGCGTGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(22-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.151

97.019

0.603
  comA Ralstonia pseudosolanacearum GMI1000

35.196

100

0.401