Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OQB65_RS07705 Genome accession   NZ_CP110808
Coordinates   1688849..1689526 (+) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas syringae strain MUP20     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683849..1694526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQB65_RS07685 (OQB65_07685) - 1683890..1684513 (+) 624 WP_058444083.1 glutathione S-transferase -
  OQB65_RS07690 (OQB65_07690) - 1684697..1685629 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  OQB65_RS07695 (OQB65_07695) - 1685626..1686414 (+) 789 WP_266002894.1 ABC transporter permease -
  OQB65_RS07700 (OQB65_07700) comA 1686551..1688767 (+) 2217 WP_074952261.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OQB65_RS07705 (OQB65_07705) exbB 1688849..1689526 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OQB65_RS07710 (OQB65_07710) - 1689523..1689954 (+) 432 WP_003317468.1 ExbD/TolR family protein -
  OQB65_RS07715 (OQB65_07715) lpxK 1689954..1690949 (+) 996 WP_057407543.1 tetraacyldisaccharide 4'-kinase -
  OQB65_RS07720 (OQB65_07720) - 1690967..1691152 (+) 186 WP_103692876.1 Trm112 family protein -
  OQB65_RS07725 (OQB65_07725) kdsB 1691149..1691913 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OQB65_RS07730 (OQB65_07730) murB 1691948..1692967 (+) 1020 WP_057407542.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=756289 OQB65_RS07705 WP_002552676.1 1688849..1689526(+) (exbB) [Pseudomonas syringae strain MUP20]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=756289 OQB65_RS07705 WP_002552676.1 1688849..1689526(+) (exbB) [Pseudomonas syringae strain MUP20]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCAT
CGAACGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCACCGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTGGACGGCGAAAAACTCAAGCAGCTGCGCGCTGACTCGCCGCTGGGCGAAATCCTTGCCGCAGGTCTGGCCAAT
TCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCCGCTGCCCGGGTCATTCATGAGCTGGAGCGCTACCT
CAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTGGTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCG
GCTCGTTCAACAGTTCCGGGGCCACCGCCAACGCCGGCGTGCTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCG
TCGGGTCTTATCGTCGCGATCCCGGCGATTTTCTTTCATCGCTTCCTGCAGAGCCGCGTCGATGAGTTGGTGGTCGGCAT
GGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAGATTGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738