Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OQB66_RS07760 Genome accession   NZ_CP110807
Coordinates   1730877..1733093 (+) Length   738 a.a.
NCBI ID   WP_266066167.1    Uniprot ID   -
Organism   Pseudomonas syringae strain MUP17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1725877..1738093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQB66_RS07745 (OQB66_07745) - 1728216..1728839 (+) 624 WP_003317463.1 glutathione S-transferase -
  OQB66_RS07750 (OQB66_07750) - 1729023..1729955 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  OQB66_RS07755 (OQB66_07755) - 1729952..1730740 (+) 789 WP_003421319.1 ABC transporter permease -
  OQB66_RS07760 (OQB66_07760) comA 1730877..1733093 (+) 2217 WP_266066167.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OQB66_RS07765 (OQB66_07765) exbB 1733175..1733852 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OQB66_RS07770 (OQB66_07770) - 1733849..1734280 (+) 432 WP_003317468.1 ExbD/TolR family protein -
  OQB66_RS07775 (OQB66_07775) lpxK 1734280..1735275 (+) 996 WP_024684436.1 tetraacyldisaccharide 4'-kinase -
  OQB66_RS07780 (OQB66_07780) - 1735293..1735478 (+) 186 WP_002552679.1 Trm112 family protein -
  OQB66_RS07785 (OQB66_07785) kdsB 1735475..1736239 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OQB66_RS07790 (OQB66_07790) murB 1736274..1737293 (+) 1020 WP_004418604.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80499.75 Da        Isoelectric Point: 10.5485

>NTDB_id=756256 OQB66_RS07760 WP_266066167.1 1730877..1733093(+) (comA) [Pseudomonas syringae strain MUP17]
MRTGMIALALGLLALRFIPALPPTWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALSDRLAPRLDGQTLWVQG
KVVGLPSVAEGVVRFELEGAWSRRAKLPARIRVAWYGGQPVNSGERWRMAVKLKRPSGLVNPDAFDYEAWLLAQRIGATG
TVVDGERLAPARAAWRDALRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRSLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWRWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVREGLLWLAGGALQWLFVFLDAVAAALPAWLPSAVPIWAWWLSLLGALLLLLPKGVPMRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVSRVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPDGNPASCILSVDARGERLLLAGDIDVSAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGAPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=756256 OQB66_RS07760 WP_266066167.1 1730877..1733093(+) (comA) [Pseudomonas syringae strain MUP17]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTATACCGGCGCTGCCGCCGACCTGGCTATT
GCTGCTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGCACCTATCCACTGGCGCTGTTCCTGCTCGGCTTCACGT
GGGCGTGCGTGTCGGCGCAGTGGGCGCTGAGTGACCGGTTGGCGCCGCGTCTCGATGGTCAGACGCTGTGGGTACAGGGC
AAGGTGGTCGGTTTGCCGAGTGTCGCCGAAGGTGTGGTGCGTTTCGAGCTGGAAGGCGCCTGGTCACGACGTGCCAAACT
GCCCGCGCGAATTCGGGTGGCCTGGTATGGCGGCCAGCCCGTTAACAGCGGGGAGCGCTGGCGCATGGCGGTTAAGCTCA
AGCGACCGTCCGGGCTGGTCAATCCCGATGCTTTCGACTATGAGGCCTGGCTGCTGGCGCAGCGCATCGGTGCGACCGGC
ACGGTGGTGGATGGTGAGCGGTTGGCACCCGCGCGTGCCGCCTGGCGCGATGCCCTTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGGGAGGGCGGTCTGGCAGCGCTTGTGCTGGGCGATGGCTCAGGATTGTCGAGTACCGACTGGCAGGTGT
TGCAGGATACCGGCACTGTGCATCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCCGGGGTGATTTACGCCTTG
GTCGCAGGCCTGGCGCGCTGGGGGCTGTGGCCACGCTCTTTGCCCTGGCTGCCGTGGGCGTGTGCACTGGCGTTCAGCGC
TGCGCTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCGGTCCGACGCGCCTGTGTGATGGTCGCGATGGTACTTCTGT
GGCGCTTGCGTTTTCGCCATCTGGGCGTGGTCTGGCCCTTGTTGCTGTCCTTCAACGCGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCGGCGGTCGGCATTCTGATCCTGATTTTCAGTGGGCGTCTCGGCGC
CTGGCGCTGGTGGCAAAGCTGGACACGGGCGCAGTGGCTGATCGCCGTCGGCTTGTTGCCGATTCTGCTGGCGCTGAACT
TGCCGATCAGCCTCAGTGGGCCGTTCGCCAACTTGCTTGCCGTGCCTTGGGTCAGCGTGATCGTCCTGCCTCCGGCATTG
CTCGGAACGCTGTTGCTGCCAGTCCCTGTAGTCAGGGAAGGTCTGCTGTGGCTGGCGGGCGGGGCGCTGCAGTGGCTGTT
CGTGTTCCTCGACGCGGTGGCGGCAGCGTTGCCGGCCTGGCTGCCCAGTGCGGTGCCAATCTGGGCATGGTGGTTGAGTC
TGCTCGGGGCCTTGCTCTTGTTACTGCCCAAGGGCGTGCCCATGCGTCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGAATCAGTGCCTGAAGGCCAGGTAGACGTGTTGCAACTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGCACTCGCAATCACACACTTCTGTATGACGCAGGTCCGCGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCAGGCGTCCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGCGGTGCG
GCGGCGGTTCATCAGGCCTTTCCGGTGAGCCGGGTGCTGGGTGGCGAGCTGGCCAGACTTGCGCCGCAACTCGACGCCCG
ATTGTGCGAGAGCGGTGCGCGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ACCCCGCCTCCTGCATCCTCAGCGTTGACGCCAGGGGCGAGCGTCTGCTGCTGGCGGGCGATATCGACGTGAGCGCCGAG
CGCGCGGCAATCGACAGCGGGTTCGACCTGCGTGCCCACTGGTTGCAGTCGCCGCATCACGGCAGCCGGACCTCATCGTC
CAAAGCGTTTCTTCGCGCCGTCGCACCGGTCGGCGTGCTGATTTCCCGTGGTCGCAACAATGCGTTCGGTCACCCACACC
CGTTGGTCATGGCGCGCTATCGAGGCTTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCTGTGCGTCTGCAACTG
GGTACGTTCGGAGCGCCGCAGGCCGAGCGTGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.43

97.019

0.606
  comA Ralstonia pseudosolanacearum GMI1000

35.196

100

0.401