Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OQB66_RS07765 Genome accession   NZ_CP110807
Coordinates   1733175..1733852 (+) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas syringae strain MUP17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1728175..1738852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQB66_RS07745 (OQB66_07745) - 1728216..1728839 (+) 624 WP_003317463.1 glutathione S-transferase -
  OQB66_RS07750 (OQB66_07750) - 1729023..1729955 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  OQB66_RS07755 (OQB66_07755) - 1729952..1730740 (+) 789 WP_003421319.1 ABC transporter permease -
  OQB66_RS07760 (OQB66_07760) comA 1730877..1733093 (+) 2217 WP_266066167.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OQB66_RS07765 (OQB66_07765) exbB 1733175..1733852 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OQB66_RS07770 (OQB66_07770) - 1733849..1734280 (+) 432 WP_003317468.1 ExbD/TolR family protein -
  OQB66_RS07775 (OQB66_07775) lpxK 1734280..1735275 (+) 996 WP_024684436.1 tetraacyldisaccharide 4'-kinase -
  OQB66_RS07780 (OQB66_07780) - 1735293..1735478 (+) 186 WP_002552679.1 Trm112 family protein -
  OQB66_RS07785 (OQB66_07785) kdsB 1735475..1736239 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OQB66_RS07790 (OQB66_07790) murB 1736274..1737293 (+) 1020 WP_004418604.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=756257 OQB66_RS07765 WP_002552676.1 1733175..1733852(+) (exbB) [Pseudomonas syringae strain MUP17]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=756257 OQB66_RS07765 WP_002552676.1 1733175..1733852(+) (exbB) [Pseudomonas syringae strain MUP17]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCAT
CGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCACCGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTGGACGGCGAAAAACTCAAGCAGCTGCGCGCTGACTCGCCGCTGGGCGAAATCCTTGCCGCAGGTCTGGCCAAT
TCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCCGCTGCCCGGGTCATTCATGAGCTGGAGCGCTACCT
CAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTGGTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCG
GCTCGTTCAACAGTTCCGGGGCCACCGCCAATGCCGGCGTGCTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCG
TCGGGTCTTATCGTCGCGATCCCGGCGATTTTCTTTCATCGCTTCTTGCAGAGCCGCGTCGATGAGTTGGTGGTCGGCAT
GGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738