Detailed information NTG0756248

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OQB66_RS04080
• Genome accession: NZ_CP110807
• Coordinates: 939792..940664 (-)
• Length: 290 a.a.
• NCBI ID: WP_017278650.1
• Uniprot ID: -
• Organism: Pseudomonas syringae strain MUP17
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 934792..945664

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OQB66_RS04050 (OQB66_04050)	-	935578..936876 (-)	1299	WP_266065727.1	NAD(P)/FAD-dependent oxidoreductase	-
OQB66_RS04055 (OQB66_04055)	-	937093..937626 (-)	534	WP_003317783.1	MOSC domain-containing protein	-
OQB66_RS04060 (OQB66_04060)	-	937623..938252 (-)	630	WP_003430735.1	DUF1780 domain-containing protein	-
OQB66_RS04065 (OQB66_04065)	-	938378..938839 (+)	462	WP_266065728.1	hypothetical protein	-
OQB66_RS04070 (OQB66_04070)	yacG	938966..939175 (-)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
OQB66_RS04075 (OQB66_04075)	coaE	939172..939795 (-)	624	WP_024643093.1	dephospho-CoA kinase	-
OQB66_RS04080 (OQB66_04080)	pilD	939792..940664 (-)	873	WP_017278650.1	prepilin peptidase	Machinery gene
OQB66_RS04085 (OQB66_04085)	pilC	940666..941883 (-)	1218	WP_024960620.1	type II secretion system F family protein	Machinery gene
OQB66_RS04090 (OQB66_04090)	pilB	941886..943580 (-)	1695	WP_017278649.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OQB66_RS04095 (OQB66_04095)	-	943806..944240 (+)	435	WP_024960621.1	pilin	-
OQB66_RS04100 (OQB66_04100)	-	945007..945594 (+)	588	WP_266066872.1	DUF433 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32144.35 Da
• Isoelectric Point: 8.5822

>NTDB_id=756248 OQB66_RS04080 WP_017278650.1 939792..940664(-) (pilD) [Pseudomonas syringae strain MUP17]
MPLLDLLASSPLAFITTCCILGLIIGSFLNVVVYRLPRMMERDWKAQSREMLGLPAEPDQPVFNLNRPRSSCPHCAHKIR
PWENLPVISYLLLRGRCSQCKAPISKRYPLVELTCAMLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=756248 OQB66_RS04080 WP_017278650.1 939792..940664(-) (pilD) [Pseudomonas syringae strain MUP17]
ATGCCCCTCCTCGACCTCCTGGCCAGCTCCCCCCTGGCCTTCATCACCACCTGCTGCATCCTCGGCCTGATCATCGGAAG
CTTCCTCAACGTGGTCGTCTACCGCCTCCCGAGAATGATGGAGCGCGACTGGAAAGCCCAATCCCGTGAAATGCTCGGCC
TGCCCGCCGAACCCGATCAGCCCGTCTTCAACCTGAACCGCCCCCGTTCCAGCTGCCCGCATTGCGCACACAAAATCCGC
CCATGGGAGAACCTGCCGGTGATCAGCTATCTGCTGCTGCGTGGTAGATGCTCGCAGTGCAAAGCGCCGATCAGCAAACG
TTACCCGCTGGTCGAGCTGACCTGCGCAATGTTGTCGGCCTACGTAGCCTGGCATTTCGGCTTTGGCTGGCAGGCGGCGG
CAATGCTGGTACTGAGTTGGGGGCTGCTGGCGATGAGTCTGATCGATGCTGATCACCAGCTGTTACCTGATTCTCTGGTG
CTGCCACTGCTGTGGCTGGGCCTGATCGTCAACGCCTTCGGGCTGTTCACCTCGCTGAATGATGCGCTATGGGGGGCGGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAAGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCCATGCTTGGCGCGTGGGGCGGCTGGCAGATTTTGCCGTTGACCATCCTGTTATCGTCGCTGGTGGGC
GCGGTGCTAGGGGTGATCATGATGCGCGTGCGCAGGGTTGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.357	97.586	0.521
pilD	Vibrio campbellii strain DS40M4	51.59	97.586	0.503
pilD	Acinetobacter baumannii D1279779	52.555	94.483	0.497
pilD	Acinetobacter nosocomialis M2	52.19	94.483	0.493
pilD	Neisseria gonorrhoeae MS11	50.373	92.414	0.466