Detailed information NTG0756246

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: OQB66_RS03755
• Genome accession: NZ_CP110807
• Coordinates: 844776..846113 (-)
• Length: 445 a.a.
• NCBI ID: WP_003427804.1
• Uniprot ID: -
• Organism: Pseudomonas syringae strain MUP17
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 839776..851113

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OQB66_RS03740 (OQB66_03740)	-	839895..843098 (+)	3204	WP_024664669.1	pilus assembly protein	-
OQB66_RS03745 (OQB66_03745)	-	843110..843517 (+)	408	WP_003392819.1	type IV pilin protein	-
OQB66_RS03750 (OQB66_03750)	thiO	843543..844646 (+)	1104	WP_266065687.1	glycine oxidase ThiO	-
OQB66_RS03755 (OQB66_03755)	pilR	844776..846113 (-)	1338	WP_003427804.1	sigma-54-dependent transcriptional regulator	Regulator
OQB66_RS03760 (OQB66_03760)	pilS	846116..847708 (-)	1593	WP_003427796.1	sensor histidine kinase	Regulator
OQB66_RS03765 (OQB66_03765)	-	847698..847937 (-)	240	WP_032607804.1	PP0621 family protein	-
OQB66_RS03770 (OQB66_03770)	-	848057..849079 (-)	1023	WP_003344571.1	outer membrane protein assembly factor BamD	-
OQB66_RS03775 (OQB66_03775)	rluD	849229..850191 (+)	963	WP_266065690.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
OQB66_RS03780 (OQB66_03780)	pgeF	850188..850916 (+)	729	WP_003427793.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49642.57 Da
• Isoelectric Point: 6.2986

>NTDB_id=756246 OQB66_RS03755 WP_003427804.1 844776..846113(-) (pilR) [Pseudomonas syringae strain MUP17]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGSGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=756246 OQB66_RS03755 WP_003427804.1 844776..846113(-) (pilR) [Pseudomonas syringae strain MUP17]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGCAGTGCACGTAACGTTGCCGAAGCCCATGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCTGACGGCAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCCCACGGCAATGTGGATACCGCGATCAACGCGCTGAAGGCCGGGGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTCGGCAGGTTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGGAGCATCGACAATC
GACTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAATCAAATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTCGTAGCGCGTCTGATCCACGAGCAGGGCCCGCGCATCGACAAACCTTT
CATACCGGTGAACTGCGGCGCCATTCCTTCCGAGCTGATGGAGAGCGAATTCTTCGGTCATCGCAAAGGCAGCTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCGCACACCGGGACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATTCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCGGGTCGGTTCCGGCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTACCCTCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAGCGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCAGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCCGCCAGCCCTCAGGAGAGCGATGGCCCGAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCGCTTGAAGAAACCCGCTGGAACCGCACCGCAGCAGCAGAAAG
GCTCAGCTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.201	99.551	0.769
pilR	Acinetobacter baumannii strain A118	48.608	100	0.51
luxO	Vibrio cholerae strain A1552	37.613	99.775	0.375