Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KI237_RS04225 Genome accession   NZ_AP021901
Coordinates   969096..970685 (-) Length   529 a.a.
NCBI ID   WP_212798928.1    Uniprot ID   -
Organism   Pseudomonas sp. St316     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 964096..975685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI237_RS04205 (PHLH4_08400) thiO 964225..965325 (+) 1101 WP_212798925.1 glycine oxidase ThiO -
  KI237_RS04210 (PHLH4_08410) - 965493..965657 (+) 165 WP_212800719.1 hypothetical protein -
  KI237_RS04215 (PHLH4_08420) - 966320..967267 (+) 948 WP_212798926.1 transposase -
  KI237_RS04220 (PHLH4_08430) pilR 967753..969099 (-) 1347 WP_212798927.1 sigma-54 dependent transcriptional regulator Regulator
  KI237_RS04225 (PHLH4_08440) pilS 969096..970685 (-) 1590 WP_212798928.1 ATP-binding protein Regulator
  KI237_RS04230 (PHLH4_08450) - 970675..970908 (-) 234 WP_014340265.1 PP0621 family protein -
  KI237_RS04235 (PHLH4_08460) - 971033..972049 (-) 1017 WP_212798929.1 outer membrane protein assembly factor BamD -
  KI237_RS04240 (PHLH4_08470) rluD 972200..973162 (+) 963 WP_212798930.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KI237_RS04245 (PHLH4_08480) pgeF 973159..973884 (+) 726 WP_212798931.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58935.77 Da        Isoelectric Point: 7.3628

>NTDB_id=75621 KI237_RS04225 WP_212798928.1 969096..970685(-) (pilS) [Pseudomonas sp. St316]
MSAEASSPREKQAQRLLRLYHLYRLSIGITLVLLISSKLDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFTAGGVPSAIGNLLIVSVAIGNTLLRSRVGLLIAAVAAIGIVGSTFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVIGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQRID
DYCTALVERLQLWLNNPSLRPPSLTVTGTGLTLQPSFIALGHYDQQQFLVFLEDLAQVAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNNADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRTWLDQFVRQARDSMAEH
QHLHLSIDPGDYITLMDPDQLTQVLDNLLRNAWRHGAMAHEQAEAWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=75621 KI237_RS04225 WP_212798928.1 969096..970685(-) (pilS) [Pseudomonas sp. St316]
GTGAGCGCTGAGGCCTCAAGCCCACGCGAAAAACAGGCGCAGCGCCTGCTGCGTCTCTATCACCTGTATCGTCTGAGCAT
CGGCATCACCTTGGTGCTGCTGATCTCCAGCAAACTGGACAACCGCCTGCTGGAGTTCGCCAATGACGACCTCCTGCGCA
GTGGCAGTTGGTTGTATCTGGTACTGAATATCCTGCTGGTGGTGTTCCTTGAGAACACCCGCCGCCCTGCCCGGCTGTTC
GGCCTGGCCCTGACCGACGTGCTGCTGCTCTCGTGGCTGTTCTTCACCGCGGGCGGTGTGCCCAGTGCCATCGGCAACCT
GCTCATTGTCTCGGTAGCCATCGGCAATACGCTGTTGCGCAGCCGGGTCGGCCTGTTGATCGCCGCTGTCGCCGCGATCG
GTATCGTCGGGTCGACTTTTTTCCTCGGCCTGAGCGACTCAAACCGTCCCAGCAGTTATCTGCAAGCCGGCACCCTGGGA
GCACTGTGTTTTGCCGCCGCCCTGCTGGTACAGGGCCTGACCCGGCGACTGGAAGCCAGTGAAACCCTGGCCGAGCAACG
GGCCAGCGAAGTGATCGGCCTCGAAGCGCTCAACGCACTGATCCTGCAACGCATGCGCACCGGCATCCTGGTACTCGACC
GCGAACGGCGCGTGCAATTGGCCAACGAAAGCGCCTTGAACCTGCTGGGCATGCACGACCTGGTCGGCCAGCGAATCGAT
GACTATTGCACCGCCCTGGTCGAACGCCTGCAATTGTGGCTGAACAACCCCAGCCTGCGCCCCCCCAGCCTGACCGTGAC
CGGCACAGGCCTGACCCTGCAACCGAGCTTCATCGCCTTGGGGCATTACGATCAGCAGCAGTTCCTGGTATTTCTTGAGG
ACCTGGCCCAGGTTGCGCAGCAGGCCCAGCAACTGAAACTCGCTTCCCTCGGGCGCCTCACTGCTGGCATCGCCCATGAA
ATCCGCAACCCCTTGGGCGCCATCAGCCACGCAGCGCAATTACTGCGCGAATCCGAGGAACTGAACAACGCGGATCGACG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAGCTGTCTCGCCGCCAGC
AAACCACCCCTCAACGCCTCGACCTGCGGACCTGGCTCGACCAGTTCGTCCGGCAGGCCCGCGACAGCATGGCCGAGCAC
CAGCATTTGCACCTGAGCATCGACCCGGGCGACTACATCACGCTGATGGACCCCGACCAGTTGACCCAGGTACTCGACAA
CCTGCTGCGCAACGCCTGGCGTCACGGCGCCATGGCCCACGAACAGGCCGAGGCCTGGCTGAAACTGTTCATCGACCCAC
ACAGCCAGCTGTCTACGCTGGACATCATCGACAACGGCCCCGGTGTCACGCCCGAGCAGCAGGCGCATTTGTTCGAGCCC
TTTTTTACCACCAGCAGCCAAGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.848

99.811

0.597

Multiple sequence alignment