Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KI237_RS04220 Genome accession   NZ_AP021901
Coordinates   967753..969099 (-) Length   448 a.a.
NCBI ID   WP_212798927.1    Uniprot ID   -
Organism   Pseudomonas sp. St316     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 962753..974099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI237_RS04200 (PHLH4_08390) - 963768..964169 (+) 402 WP_212798924.1 type IV pilin protein -
  KI237_RS04205 (PHLH4_08400) thiO 964225..965325 (+) 1101 WP_212798925.1 glycine oxidase ThiO -
  KI237_RS04210 (PHLH4_08410) - 965493..965657 (+) 165 WP_212800719.1 hypothetical protein -
  KI237_RS04215 (PHLH4_08420) - 966320..967267 (+) 948 WP_212798926.1 transposase -
  KI237_RS04220 (PHLH4_08430) pilR 967753..969099 (-) 1347 WP_212798927.1 sigma-54 dependent transcriptional regulator Regulator
  KI237_RS04225 (PHLH4_08440) pilS 969096..970685 (-) 1590 WP_212798928.1 ATP-binding protein Regulator
  KI237_RS04230 (PHLH4_08450) - 970675..970908 (-) 234 WP_014340265.1 PP0621 family protein -
  KI237_RS04235 (PHLH4_08460) - 971033..972049 (-) 1017 WP_212798929.1 outer membrane protein assembly factor BamD -
  KI237_RS04240 (PHLH4_08470) rluD 972200..973162 (+) 963 WP_212798930.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KI237_RS04245 (PHLH4_08480) pgeF 973159..973884 (+) 726 WP_212798931.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49979.48 Da        Isoelectric Point: 6.2009

>NTDB_id=75620 KI237_RS04220 WP_212798927.1 967753..969099(-) (pilR) [Pseudomonas sp. St316]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGEAFDLCLTDMRLPDGTGLELVQHIQQRFPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPGTLLERSLLGNSPPMLCVRKQIEKLARSQA
PVYISGESGSGKELVARLIHEQGPRANLGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLAGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTGTPPAKLHPQALDALRNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEQTRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=75620 KI237_RS04220 WP_212798927.1 967753..969099(-) (pilR) [Pseudomonas sp. St316]
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGGGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACTGGCCTGGAACTGGTGCAGCACATCCAGCAACGTTTCCCCCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCGTTTGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGGGAGCTGGTCACCAGTGCCCTGCGCCTGCCGCCGGTCGCCACACCGGGCACCCTTC
TCGAGCGCAGCCTGCTGGGTAACTCGCCACCGATGCTCTGCGTGCGCAAGCAGATCGAAAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCAGCGGCAAGGAACTGGTCGCCCGGCTGATTCACGAACAAGGTCCCCGTGCCAA
CCTGGGCTTTGTGCCGGTCAACTGTGGGGCGATTCCCACGGAGCTGATGGAAAGCGAATTTTTCGGCCATCGAAAAGGTA
GTTTCAGCGGCGCCATCGAGGACAAGCCCGGACTGTTTCAGGCCGCCCATGGCGGGACCTTGTTCCTCGATGAAGTGGCC
GACCTGCCCTTGGCGATGCAGGTCAAGCTGTTGCGAGCCATCCAGGAAAAAGCCGTGCGCGCTGTTGGCGGCCAGCAGGA
AGAAGTGGTGGATGTGCGAATCCTCTGCGCCACCCACAAGGACCTGGCCGGCGAAGTCGCCGCCGGGCGGTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTCCCACCGTTGCGTGAACGCCGTGAAGACATCGAGCTGCTGGCC
AACCACATGCTCCAGCGCCTGGCGGCCAACACCGGCACTCCACCGGCCAAGTTGCATCCCCAGGCGTTGGATGCTCTCAG
GAATTACCGCTTTCCGGGCAACGTGCGGGAGCTGGAGAACATGCTTGAGCGTGCCTACACCCTTTGCGAACAGCAGCAGA
TCGAAGCGGATGACCTGCGCCTGGCCGAGGGCAATAGTACTACTGAGGCAGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAGCGCAAGCTCATCCTCCAGGCATTGGAGCAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTTGGGTTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.829

99.107

0.781
  pilR Acinetobacter baumannii strain A118

49.673

100

0.509

Multiple sequence alignment