Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   BBP27_RS09875 Genome accession   NZ_CP110721
Coordinates   2071758..2072252 (+) Length   164 a.a.
NCBI ID   WP_081456519.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2066758..2077252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS09870 comE 2071292..2071579 (+) 288 WP_188211820.1 helix-hairpin-helix domain-containing protein Machinery gene
  BBP27_RS09875 comP 2071758..2072252 (+) 495 WP_081456519.1 type IV pilin protein Machinery gene
  BBP27_RS09880 uvrB 2072402..2074429 (+) 2028 WP_188212337.1 excinuclease ABC subunit UvrB -
  BBP27_RS09885 - 2074521..2075327 (+) 807 WP_188212336.1 hypothetical protein -
  BBP27_RS09890 - 2075344..2075700 (+) 357 WP_188212335.1 hypothetical protein -
  BBP27_RS09895 xth 2076154..2076924 (-) 771 WP_188212334.1 exodeoxyribonuclease III -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17931.96 Da        Isoelectric Point: 10.0610

>NTDB_id=756021 BBP27_RS09875 WP_081456519.1 2071758..2072252(+) (comP) [Neisseria sp. RH3002v2g]
MYLKAFDGKRNGATVQRGYSLVQLLVVMLLVSILAAAAFTAYRESVRSANLRAAHAALLENARFMEQFYAKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECK
PFMG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=756021 BBP27_RS09875 WP_081456519.1 2071758..2072252(+) (comP) [Neisseria sp. RH3002v2g]
ATGTACTTAAAAGCATTTGACGGAAAACGGAATGGGGCAACTGTGCAGAGGGGCTACTCATTGGTACAGCTGTTGGTGGT
GATGCTGCTGGTTTCGATCTTGGCGGCGGCTGCCTTTACGGCCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGG
CGCATGCCGCGCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATGCGAAAAAGGGTAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAATTGCCGGTGAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGTCAGGCTAAAGGTATCCTGGAGGG
TAAGTTTACCTTGAAGGCGGTGGCGCTGGATAGGGAAGCAGAGCCGAGGGTGCTGCGCTTGAACGAGTCGCTGACGGCGG
TGGTGTGCGGGAAGATGAAGGGGAAGGGTAGCTGTACGGACGGTGAGGAGATATTTAGGGGTAATGATGCGGAGTGTAAG
CCTTTTATGGGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(41-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

94.512

100

0.945
  comP Neisseria meningitidis 8013

51.007

90.854

0.463
  comP Neisseria gonorrhoeae MS11

51.02

89.634

0.457