Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   BBP27_RS09125 Genome accession   NZ_CP110721
Coordinates   1934158..1934652 (+) Length   164 a.a.
NCBI ID   WP_265511079.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1929158..1939652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS09120 comE 1933692..1933979 (+) 288 WP_188211820.1 helix-hairpin-helix domain-containing protein Machinery gene
  BBP27_RS09125 comP 1934158..1934652 (+) 495 WP_265511079.1 type IV pilin protein Machinery gene
  BBP27_RS09130 pyrB 1935697..1936617 (+) 921 WP_003749217.1 aspartate carbamoyltransferase -
  BBP27_RS09135 pyrI 1936628..1937086 (+) 459 WP_003749219.1 aspartate carbamoyltransferase regulatory subunit -
  BBP27_RS09140 - 1937280..1937945 (+) 666 WP_188212424.1 hypothetical protein -
  BBP27_RS09145 - 1938221..1939084 (+) 864 WP_188212423.1 GNAT family N-acetyltransferase -
  BBP27_RS09150 - 1939108..1939233 (+) 126 WP_265511080.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17904.89 Da        Isoelectric Point: 9.9228

>NTDB_id=756017 BBP27_RS09125 WP_265511079.1 1934158..1934652(+) (comP) [Neisseria sp. RH3002v2g]
MYLKAFDGKRNGATVQRGYSLVQLLVVMLLVSILAAAAFTAYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGTGSCADGEEIFRGNDAECK
PFMG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=756017 BBP27_RS09125 WP_265511079.1 1934158..1934652(+) (comP) [Neisseria sp. RH3002v2g]
ATGTACTTAAAAGCATTTGACGGAAAACGGAATGGGGCAACTGTGCAGAGGGGCTACTCATTGGTACAGCTGTTGGTGGT
GATGCTGCTGGTTTCGATCTTGGCGGCGGCTGCCTTTACGGCCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGG
CGCATGCCGCGCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTACACGAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAATTGCCGGTGAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGTCAGGCTAAGGGGATTCTGGAGGG
TAAGTTTACTTTGAAGGCGGTGGCGCTGGACAGGGAGGCGGAGCCGAGGGTGCTGCGCTTGAACGAGTCGCTGACGGCGG
TGGTGTGCGGGAAGATGAAGGGGACGGGCAGCTGTGCGGACGGCGAGGAGATATTTAGGGGTAATGATGCGGAGTGTAAG
CCTTTTATGGGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(41-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

92.683

100

0.927
  comP Neisseria meningitidis 8013

51.007

90.854

0.463
  comP Neisseria gonorrhoeae MS11

51.02

89.634

0.457