Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   BBP27_RS00970 Genome accession   NZ_CP110721
Coordinates   198631..198918 (+) Length   95 a.a.
NCBI ID   WP_188211820.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 193631..203918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS00970 comE 198631..198918 (+) 288 WP_188211820.1 helix-hairpin-helix domain-containing protein Machinery gene
  BBP27_RS00975 hpnD 199455..200303 (+) 849 WP_188211411.1 presqualene diphosphate synthase HpnD -
  BBP27_RS00980 hpnE 200300..201607 (+) 1308 WP_188211412.1 hydroxysqualene dehydroxylase HpnE -
  BBP27_RS00985 - 201703..202422 (+) 720 WP_070822525.1 SDR family oxidoreductase -
  BBP27_RS00990 thiL 202610..203566 (+) 957 WP_188211413.1 thiamine-phosphate kinase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9771.49 Da        Isoelectric Point: 10.4923

>NTDB_id=755982 BBP27_RS00970 WP_188211820.1 198631..198918(+) (comE) [Neisseria sp. RH3002v2g]
MKKFLFGVVAAVCTAFSLAAVNVNTASSVELEALPGIGPAKAKAIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=755982 BBP27_RS00970 WP_188211820.1 198631..198918(+) (comE) [Neisseria sp. RH3002v2g]
ATGAAGAAATTTTTATTTGGTGTAGTTGCCGCCGTGTGTACGGCATTCTCTTTGGCTGCCGTGAACGTCAATACGGCCTC
TTCTGTGGAACTGGAGGCATTGCCGGGTATCGGCCCGGCTAAGGCGAAGGCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCCCAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.659

86.316

0.463