Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OOL18_RS09915 Genome accession   NZ_CP110664
Coordinates   2067068..2067724 (-) Length   218 a.a.
NCBI ID   WP_005609196.1    Uniprot ID   A3N356
Organism   Actinobacillus pleuropneumoniae strain AP_123     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2062068..2072724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOL18_RS09895 nanA 2062441..2063319 (+) 879 WP_005599265.1 N-acetylneuraminate lyase -
  OOL18_RS09900 nagB 2063369..2064172 (+) 804 WP_005599267.1 glucosamine-6-phosphate deaminase -
  OOL18_RS09905 nagA 2064224..2065369 (+) 1146 WP_005599269.1 N-acetylglucosamine-6-phosphate deacetylase -
  OOL18_RS09910 fumC 2065519..2066913 (-) 1395 WP_005605803.1 class II fumarate hydratase -
  OOL18_RS09915 sxy/tfoX 2067068..2067724 (-) 657 WP_005609196.1 TfoX/Sxy family DNA transformation protein Regulator
  OOL18_RS09920 rpsJ 2068132..2068443 (+) 312 WP_001181005.1 30S ribosomal protein S10 -
  OOL18_RS09925 rplC 2068469..2069095 (+) 627 WP_005599280.1 50S ribosomal protein L3 -
  OOL18_RS09930 rplD 2069111..2069713 (+) 603 WP_005599282.1 50S ribosomal protein L4 -
  OOL18_RS09935 rplW 2069710..2070015 (+) 306 WP_005599290.1 50S ribosomal protein L23 -
  OOL18_RS09940 rplB 2070036..2070857 (+) 822 WP_005599291.1 50S ribosomal protein L2 -
  OOL18_RS09945 rpsS 2070885..2071160 (+) 276 WP_005539416.1 30S ribosomal protein S19 -
  OOL18_RS09950 rplV 2071171..2071503 (+) 333 WP_005599292.1 50S ribosomal protein L22 -
  OOL18_RS09955 rpsC 2071522..2072229 (+) 708 WP_005599293.1 30S ribosomal protein S3 -
  OOL18_RS09960 rplP 2072243..2072653 (+) 411 WP_005599294.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25633.15 Da        Isoelectric Point: 9.9359

>NTDB_id=755841 OOL18_RS09915 WP_005609196.1 2067068..2067724(-) (sxy/tfoX) [Actinobacillus pleuropneumoniae strain AP_123]
MAISPKKFQYLKEIFSPLGEINFKSYFSYLGIFKDDTMFALYDHKNDRLYLRKSAQFYPDIIRTIPIHFLIDRRIGKQQS
HIFYLIPSSIIHNLHLYTHWILSAIEEYQTAKAKLISQNKNKIRLLPNLNINIERLLARIEIYTVDDLKNVGVINAFVKL
IMLGLEVTELLLFKLYAALEHKYIYMLSKQEKQSLLIEADLSLYNAGLRKRFAISQAN

Nucleotide


Download         Length: 657 bp        

>NTDB_id=755841 OOL18_RS09915 WP_005609196.1 2067068..2067724(-) (sxy/tfoX) [Actinobacillus pleuropneumoniae strain AP_123]
ATGGCAATATCCCCAAAAAAGTTCCAATATCTTAAGGAGATTTTTAGTCCTCTTGGAGAAATTAACTTCAAAAGCTATTT
TTCTTACTTAGGAATATTTAAAGACGATACTATGTTCGCCCTCTATGATCATAAAAACGATCGATTATACTTAAGAAAAT
CCGCTCAATTTTATCCGGATATTATAAGAACAATACCGATACATTTTTTAATTGATCGTCGTATCGGTAAGCAACAATCT
CATATTTTTTATCTTATACCTTCTTCTATTATTCACAATCTTCATTTATATACTCATTGGATTCTCTCTGCTATCGAAGA
ATATCAAACTGCAAAGGCCAAATTGATTTCTCAAAATAAAAATAAAATTCGTCTGCTTCCCAATTTGAATATCAATATAG
AAAGATTATTGGCACGTATTGAGATTTATACCGTAGATGATTTAAAAAACGTAGGCGTGATTAATGCGTTTGTAAAACTG
ATAATGCTAGGCTTGGAAGTAACCGAATTACTCCTCTTCAAACTCTACGCTGCGCTCGAACATAAATATATCTATATGTT
ATCCAAGCAAGAAAAACAATCCCTATTAATTGAAGCCGATTTATCTCTCTATAACGCAGGCCTACGTAAACGCTTCGCTA
TCTCACAGGCTAACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(120-196)

TfoX N-terminal domain (TfoX_N)

(13-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N356

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

100

100

1
  sxy/tfoX Actinobacillus suis H91-0380

63.721

98.624

0.628
  sxy/tfoX Glaesserella parasuis strain SC1401

39.234

95.872

0.376