Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OKW98_RS25870 Genome accession   NZ_CP110644
Coordinates   5828235..5829575 (+) Length   446 a.a.
NCBI ID   WP_265387237.1    Uniprot ID   -
Organism   Pseudomonas sp. KU26590     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5823235..5834575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW98_RS25845 (OKW98_25850) pgeF 5823385..5824113 (-) 729 WP_265387234.1 peptidoglycan editing factor PgeF -
  OKW98_RS25850 (OKW98_25855) rluD 5824122..5825084 (-) 963 WP_265387235.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OKW98_RS25855 (OKW98_25860) - 5825236..5826258 (+) 1023 WP_108118973.1 outer membrane protein assembly factor BamD -
  OKW98_RS25860 (OKW98_25865) - 5826411..5826650 (+) 240 WP_133774309.1 PP0621 family protein -
  OKW98_RS25865 (OKW98_25870) pilS 5826640..5828232 (+) 1593 WP_265387236.1 sensor histidine kinase Regulator
  OKW98_RS25870 (OKW98_25875) pilR 5828235..5829575 (+) 1341 WP_265387237.1 sigma-54-dependent transcriptional regulator Regulator
  OKW98_RS25875 (OKW98_25880) - 5829866..5830570 (+) 705 WP_416148547.1 transporter substrate-binding domain-containing protein -
  OKW98_RS25880 (OKW98_25885) - 5830567..5831412 (+) 846 WP_265387239.1 amino acid ABC transporter permease -
  OKW98_RS25885 (OKW98_25890) - 5831447..5832823 (+) 1377 WP_265387240.1 LLM class flavin-dependent oxidoreductase -
  OKW98_RS25890 (OKW98_25895) thiO 5832908..5834011 (-) 1104 WP_265389840.1 glycine oxidase ThiO -
  OKW98_RS25895 (OKW98_25900) - 5834042..5834437 (-) 396 WP_265387241.1 type IV pilin protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50305.58 Da        Isoelectric Point: 6.4316

>NTDB_id=755606 OKW98_RS25870 WP_265387237.1 5828235..5829575(+) (pilR) [Pseudomonas sp. KU26590]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVKEAQEWLAREAFDLCLTDMRLPDGNGLELVQHIQKRHNQVPVA
MITAHGSLDTAIHALKAGAFDFLTKPVDLTRLRELVSSALRLRLTPAEQNRIDHRLLGSSPPMQSLRKQIAKLARSQAPI
YISGESGSGKELVARLIHEQGPRADQPFVPVNCGAIPSELMESEFFGHRKGSFTGAHEDKPGLFQVANGGTLFLDEVADL
PLAMQVKLLRAIQEKSVRAIGGQQEQIVDVRVLCATHKDLNQEVDAGRFRQDLYYRLNVIELRVPPLRERREDIEEIANS
VLRRLTEAAGEPATLLPPLALAALKGYRFPGNVRELENMLERAYTLCEDDQINTADLRLAEPSRSTEQDGPSLADIDNLE
DYLESIERKLILQALEETRWNRTAAAQRLNLTFRSMRYRLKKLGLE

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=755606 OKW98_RS25870 WP_265387237.1 5828235..5829575(+) (pilR) [Pseudomonas sp. KU26590]
ATGAGCCAACGGCAAAAGATCCTGATCGTCGACGATGAGCCGGACATTCGTGAGTTGCTGGAAATCACGCTCGGACGGAT
GAAACTGGACACCCGCAGCGCGCGCAATGTGAAGGAAGCGCAGGAGTGGCTGGCGCGCGAGGCGTTTGACCTGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAATGGCCTGGAGCTGGTGCAACACATACAGAAGCGCCACAACCAGGTGCCGGTGGCG
ATGATCACCGCCCACGGCAGCCTCGATACGGCAATCCATGCACTGAAAGCCGGCGCGTTTGACTTCCTCACCAAGCCGGT
CGACTTGACGCGCTTGCGTGAGTTGGTCTCCAGCGCCTTGCGCCTGCGCCTCACGCCTGCCGAGCAAAACCGCATCGACC
ACCGCCTGCTTGGCAGCTCTCCACCGATGCAATCGCTGCGCAAGCAGATCGCCAAACTGGCGCGCAGCCAGGCACCGATT
TACATCAGCGGCGAGTCGGGCAGTGGCAAGGAGCTGGTGGCCCGATTGATTCATGAGCAAGGCCCGCGCGCCGATCAACC
GTTCGTGCCAGTCAACTGTGGCGCGATCCCGTCAGAGCTCATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGTTTCA
CCGGCGCCCACGAAGACAAGCCCGGGCTGTTTCAGGTCGCCAATGGCGGGACGCTGTTTCTCGATGAAGTGGCTGACCTG
CCGCTGGCGATGCAGGTGAAATTGCTCCGCGCGATCCAGGAAAAATCCGTCCGCGCCATCGGCGGCCAGCAGGAGCAAAT
CGTGGACGTTCGCGTGCTGTGCGCGACCCACAAGGACCTCAATCAAGAAGTGGACGCCGGGCGCTTTCGGCAAGACTTGT
ATTACCGGCTGAACGTCATCGAACTGCGCGTTCCGCCCCTGCGCGAGCGCCGCGAGGATATCGAAGAGATCGCCAACAGC
GTGCTGCGCCGCCTGACCGAGGCCGCCGGCGAACCTGCAACCCTCCTCCCGCCGCTCGCGCTGGCCGCGCTCAAGGGATA
TCGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATGCTCGAACGGGCGTACACGTTGTGCGAAGACGATCAGATCAACA
CCGCAGACCTGCGATTGGCCGAGCCGTCACGGTCTACCGAGCAGGACGGTCCAAGCCTGGCCGACATCGATAATCTGGAA
GACTACCTGGAAAGCATCGAGCGCAAACTGATTCTGCAAGCGCTGGAGGAAACCCGCTGGAATCGAACGGCAGCGGCGCA
ACGCCTGAATTTGACGTTCAGGTCGATGCGTTATCGGTTGAAGAAATTGGGGTTGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.135

99.327

0.796
  pilR Acinetobacter baumannii strain A118

47.948

100

0.498