Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OKW98_RS25865 Genome accession   NZ_CP110644
Coordinates   5826640..5828232 (+) Length   530 a.a.
NCBI ID   WP_265387236.1    Uniprot ID   -
Organism   Pseudomonas sp. KU26590     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5821640..5833232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW98_RS25845 (OKW98_25850) pgeF 5823385..5824113 (-) 729 WP_265387234.1 peptidoglycan editing factor PgeF -
  OKW98_RS25850 (OKW98_25855) rluD 5824122..5825084 (-) 963 WP_265387235.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OKW98_RS25855 (OKW98_25860) - 5825236..5826258 (+) 1023 WP_108118973.1 outer membrane protein assembly factor BamD -
  OKW98_RS25860 (OKW98_25865) - 5826411..5826650 (+) 240 WP_133774309.1 PP0621 family protein -
  OKW98_RS25865 (OKW98_25870) pilS 5826640..5828232 (+) 1593 WP_265387236.1 sensor histidine kinase Regulator
  OKW98_RS25870 (OKW98_25875) pilR 5828235..5829575 (+) 1341 WP_265387237.1 sigma-54-dependent transcriptional regulator Regulator
  OKW98_RS25875 (OKW98_25880) - 5829866..5830570 (+) 705 WP_416148547.1 transporter substrate-binding domain-containing protein -
  OKW98_RS25880 (OKW98_25885) - 5830567..5831412 (+) 846 WP_265387239.1 amino acid ABC transporter permease -
  OKW98_RS25885 (OKW98_25890) - 5831447..5832823 (+) 1377 WP_265387240.1 LLM class flavin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58496.71 Da        Isoelectric Point: 6.5044

>NTDB_id=755605 OKW98_RS25865 WP_265387236.1 5826640..5828232(+) (pilS) [Pseudomonas sp. KU26590]
MTADSLSLTTPQAQRILRLYHLYRLSIGVLLVLLISSSLDAELLELADIELFRIGCWLYLVFNILVVVLLERPSRQGQLF
SLAMADTLMLAALFYAGGGAPSGIGNLIIASVAISNVLLRKRTGLLIAALSAIGIIYLTFYISYHKPSAANHFVQAGSLG
ALCFAAALLVQALARRLQLSEDIAERRAADVDNLEELNALILQRMRTGILVIDEDHKVLLANQSALNLLGHERLLGEIVD
AYSPQLVERLGQWMTNPSMAPRSITTSAIGPVLRPGFIALARGSHRHTLVFLDDLSQISQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLLESEELTAPDRRLNQIIHDQSRRMNLVIENVLQLSRRRQTEPQLLDLKQWLEAFVRNLGDELQAG
QRVHLDILPGVLSTQMDAEQLQQVMSNLVQNGLRYSGQLHEQAQVWLRLFQAPFSELPTLEVLDDGPGVADEHLAKIFEP
FFTTESKGTGLGLYLSRELCESNQASLNYTPREGGGSCMRITFAHPFKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=755605 OKW98_RS25865 WP_265387236.1 5826640..5828232(+) (pilS) [Pseudomonas sp. KU26590]
GTGACCGCTGACAGCCTTTCGCTGACGACGCCCCAGGCCCAACGCATCCTGCGGCTGTATCACCTGTATCGTCTGAGCAT
CGGCGTGCTGTTGGTGCTGCTGATCTCCAGCAGCCTGGATGCAGAATTGCTGGAGCTGGCTGATATCGAGCTGTTCCGCA
TCGGCTGCTGGCTGTATCTGGTGTTCAACATCCTGGTCGTGGTGCTGCTTGAGCGCCCGAGCCGCCAGGGGCAACTGTTC
TCCCTGGCCATGGCTGACACGCTGATGCTAGCGGCCCTGTTCTACGCCGGGGGCGGTGCACCGAGCGGCATTGGTAACCT
GATCATTGCCTCGGTGGCGATCAGCAATGTGCTACTGCGCAAGCGGACCGGACTGCTGATTGCCGCGCTATCGGCCATCG
GCATCATCTACCTGACGTTCTACATCAGCTATCACAAGCCCTCTGCGGCCAATCATTTCGTGCAGGCCGGCTCGCTCGGC
GCCCTGTGCTTCGCGGCAGCGCTGCTGGTTCAGGCCCTCGCACGGCGGCTTCAGCTCAGCGAAGACATCGCCGAACGTCG
CGCCGCCGATGTCGACAACCTTGAAGAGCTCAACGCTCTGATCCTGCAGCGCATGCGCACGGGGATTCTGGTGATCGACG
AGGATCACAAAGTGTTGCTCGCCAACCAGAGCGCGCTGAATCTGCTGGGCCACGAGCGCCTGCTCGGCGAAATCGTCGAC
GCCTACTCGCCGCAACTGGTCGAGCGCCTGGGTCAGTGGATGACCAACCCGTCGATGGCGCCGCGCAGCATCACGACCTC
GGCCATTGGTCCGGTGCTGCGCCCGGGTTTCATCGCACTGGCGCGCGGCAGCCATCGCCACACCCTGGTGTTTCTCGATG
ACCTTTCACAGATTTCGCAACAGGCCCAACAGCTTAAACTCGCCGCGCTGGGCAGACTGACCGCCGGTATCGCCCACGAG
ATCCGCAACCCGCTGGGCGCCATCAGTCATGCCGCACAACTGCTGCTGGAATCCGAGGAACTGACCGCGCCGGACCGGCG
TCTCAATCAGATCATTCACGATCAATCGCGGCGGATGAATCTGGTGATCGAGAACGTTCTGCAGTTGTCTCGTCGACGTC
AGACCGAACCCCAGCTGCTCGATCTCAAGCAGTGGCTCGAGGCGTTCGTCCGTAACCTTGGCGATGAGCTGCAGGCCGGT
CAACGCGTGCATCTGGACATCCTTCCGGGCGTGCTCTCCACGCAGATGGACGCCGAACAACTGCAGCAGGTGATGAGCAA
TCTGGTGCAAAACGGTTTGCGCTACAGCGGCCAACTGCACGAACAGGCGCAAGTCTGGCTAAGGTTGTTTCAAGCCCCGT
TCAGCGAACTGCCTACACTGGAGGTTCTCGACGACGGCCCGGGGGTTGCCGATGAGCACCTCGCCAAGATCTTCGAACCT
TTTTTCACCACCGAAAGCAAAGGAACCGGCTTGGGCCTGTACCTGTCGCGCGAACTGTGCGAAAGCAATCAGGCGAGCCT
CAATTACACACCACGGGAAGGTGGCGGTAGCTGCATGCGAATAACCTTCGCCCATCCGTTCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

62.712

100

0.628