Detailed information NTG0755593

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: OKW98_RS16865
• Genome accession: NZ_CP110644
• Coordinates: 3839881..3841047 (-)
• Length: 388 a.a.
• NCBI ID: WP_265385793.1
• Uniprot ID: -
• Organism: Pseudomonas sp. KU26590
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3834881..3846047

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OKW98_RS16850 (OKW98_16855)	-	3835837..3837252 (+)	1416	WP_265385790.1	sigma-54 interaction domain-containing protein	-
OKW98_RS16855 (OKW98_16860)	-	3837510..3838901 (+)	1392	WP_265385791.1	GntP family permease	-
OKW98_RS16860 (OKW98_16865)	-	3838912..3839682 (+)	771	WP_265385792.1	3-hydroxybutyrate dehydrogenase	-
OKW98_RS16865 (OKW98_16870)	pilU	3839881..3841047 (-)	1167	WP_265385793.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
OKW98_RS16870 (OKW98_16875)	-	3841328..3841603 (+)	276	WP_265385794.1	peptidylprolyl isomerase	-
OKW98_RS16875 (OKW98_16880)	-	3841773..3842714 (-)	942	WP_265385795.1	sugar kinase	-
OKW98_RS16880 (OKW98_16885)	-	3842727..3843932 (-)	1206	WP_265385796.1	amino acid deaminase	-
OKW98_RS16885 (OKW98_16890)	-	3843990..3844754 (-)	765	WP_265389755.1	IclR family transcriptional regulator	-
OKW98_RS16890 (OKW98_16895)	-	3844947..3845336 (-)	390	WP_237254455.1	RidA family protein	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 42938.04 Da
• Isoelectric Point: 6.6244

>NTDB_id=755593 OKW98_RS16865 WP_265385793.1 3839881..3841047(-) (pilU) [Pseudomonas sp. KU26590]
MDFPALLKVLATQDGSDLYLSTGAPPCAKFNGVLKPLGTEAFKPGDVGLIANAIMDAEQRMDFERDLEMNLAFSLSGVGR
FRINIFKQRNEVSIVARNIKLDIPKFEDLHLPPILLDVIMEKHGLVLFVGATGSGKSTSLAALIDHRNRHASGHIITIED
PVEFIHKHKRSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEERRPQLLHDLGNNLKAFVSQRLVKTTDGKRRAAVEVMLGTPTIRDLIHRNELTELKGIMEKSTNLGMQTFDNAL
YDLAVEGAITEEEALKNADSANNVRLRLKLHSEDGPSTIATAPRAPQPAAQVNVKDWGLVDERDERGS

Nucleotide

• Length: 1167 bp

>NTDB_id=755593 OKW98_RS16865 WP_265385793.1 3839881..3841047(-) (pilU) [Pseudomonas sp. KU26590]
ATGGATTTTCCGGCGTTGTTGAAGGTGCTTGCCACCCAGGATGGATCGGACCTTTACCTGTCCACCGGCGCGCCCCCCTG
CGCCAAGTTCAATGGCGTGCTCAAACCGCTGGGCACTGAAGCGTTCAAGCCCGGCGACGTCGGCCTGATCGCCAACGCCA
TCATGGACGCCGAGCAGCGCATGGATTTCGAACGCGATCTGGAAATGAACCTGGCGTTTTCCCTGTCCGGTGTCGGGCGA
TTCCGCATCAACATCTTCAAGCAGCGCAACGAAGTGTCCATCGTGGCGCGTAACATCAAGCTCGACATCCCCAAATTCGA
AGACCTGCACCTGCCGCCGATCCTGCTCGACGTGATCATGGAAAAGCACGGCCTGGTGCTGTTCGTCGGCGCCACCGGTT
CGGGTAAGTCGACCTCGCTCGCCGCACTGATCGACCACCGCAACCGCCACGCCAGCGGCCACATCATCACCATCGAAGAC
CCGGTGGAGTTCATCCACAAACACAAGCGCTCGATCATCAATCAGCGCGAAGTGGGCGTCGATACGCGCAGCTTCCACGC
GGCGCTGAAGAACACCCTGCGTCAGGCACCGGACGTGATCCTGATCGGCGAGATCCGCGACCGCGAGACCATGGAGCACG
CGCTGGCGTTTGCCGACACCGGTCACCTGGCGATCTCGACGCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCGGAAGAGCGGCGCCCGCAGTTGCTCCATGACCTGGGCAACAACCTCAAGGCGTTCGTCTCGCAGCG
GCTGGTCAAGACCACCGACGGCAAGCGCCGCGCGGCAGTGGAGGTGATGCTGGGCACGCCGACCATTCGCGATTTGATTC
ACCGCAACGAGCTGACCGAGCTCAAGGGCATCATGGAGAAGTCCACCAATCTGGGCATGCAGACCTTCGACAACGCGCTG
TATGACTTGGCGGTGGAGGGCGCGATCACCGAAGAAGAAGCCCTGAAGAACGCCGACTCGGCCAACAACGTGCGCCTGCG
GTTAAAATTGCACAGCGAGGACGGGCCATCGACCATCGCCACCGCGCCACGCGCGCCCCAGCCCGCTGCGCAGGTGAACG
TGAAGGATTGGGGGCTGGTGGACGAGCGGGACGAGCGGGGGAGTTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (114-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	57.143	92.01	0.526
pilU	Acinetobacter baylyi ADP1	52.394	91.495	0.479
pilU	Vibrio cholerae strain A1552	52	90.206	0.469
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.593	87.371	0.363
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	42.342	85.825	0.363
pilT	Vibrio cholerae strain A1552	42.342	85.825	0.363
pilT	Pseudomonas stutzeri DSM 10701	40.816	88.402	0.361