Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OKW98_RS09545 Genome accession   NZ_CP110644
Coordinates   2115619..2117835 (+) Length   738 a.a.
NCBI ID   WP_265388933.1    Uniprot ID   -
Organism   Pseudomonas sp. KU26590     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2110619..2122835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW98_RS09525 (OKW98_09525) - 2112236..2112859 (+) 624 WP_265388930.1 glutathione S-transferase family protein -
  OKW98_RS09530 (OKW98_09530) - 2113079..2114011 (+) 933 WP_265388931.1 ABC transporter ATP-binding protein -
  OKW98_RS09535 (OKW98_09535) - 2114008..2114787 (+) 780 WP_065993104.1 ABC transporter permease -
  OKW98_RS09540 (OKW98_09540) - 2114944..2115465 (-) 522 WP_265388932.1 DUF2062 domain-containing protein -
  OKW98_RS09545 (OKW98_09545) comA 2115619..2117835 (+) 2217 WP_265388933.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OKW98_RS09550 (OKW98_09550) exbB 2117920..2118594 (+) 675 WP_265388934.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OKW98_RS09555 (OKW98_09555) - 2118591..2119022 (+) 432 WP_065993112.1 ExbD/TolR family protein -
  OKW98_RS09560 (OKW98_09560) lpxK 2119022..2120017 (+) 996 WP_265388935.1 tetraacyldisaccharide 4'-kinase -
  OKW98_RS09565 (OKW98_09565) - 2120035..2120220 (+) 186 WP_003174668.1 Trm112 family protein -
  OKW98_RS09570 (OKW98_09570) kdsB 2120217..2120981 (+) 765 WP_265388936.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OKW98_RS09575 (OKW98_09575) murB 2121028..2122047 (+) 1020 WP_265388937.1 UDP-N-acetylmuramate dehydrogenase -
  OKW98_RS09580 (OKW98_09580) - 2122104..2122700 (+) 597 WP_265388938.1 nucleotidyltransferase family protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80309.05 Da        Isoelectric Point: 7.8461

>NTDB_id=755590 OKW98_RS09545 WP_265388933.1 2115619..2117835(+) (comA) [Pseudomonas sp. KU26590]
MRTGMLALALGLLTLRFLPALPPVWLLLMMPVVALMLLPFRTYPLAFYLFGLAWACVSASSALDDRLAERLDGQTLWLEG
RVIGLPQTIDGVVRFQLEDPVSRRARLPEQIRIGWYGGPPISSGERWRVAVKLKRPGGLVNPGAFDYQAWLLAQRIGATG
TVVDGQLLEPALGNWRDGIRQRLLSVDAQGRQGGLAALVLGDDSGLSAADWQVLQDTGTVHLLVISGTHIGLLAGLLYGL
VAGLARWGAWPPFLPWLHSACLAAFAGALAYGVLAGFEVPVQRAVIMLGLVLLWRLRFRQLGTTWPLLLALNLVLIAEPL
VTLRPGFWLSFLAVGILMLIFSGRLGSWSWLQSWTRAQWLIALGLLPVLLALNLPVSVSGPAVNLLAVPWLSLLILPLAL
LGTLLLAIPPLGESLLWLAGGSMDGLFRWLTFMADLAPAWTGPHVPLWVWPLSLLGALLLLLPKGLPMRPLGWPLLLLCI
FPPQKAVPVGQVEVLQLDVGQGLAILLRTRDHALLYDAGPRFGDFDIGERVVLPAIRRAGVKRLDTLLLSHADSDHAGGA
AAVLKGVPVARVLAGDTGRMPAELSAESCRNGETWTWDEVTFSTWIWEHAAEGNQASCVLSVEANGERLLLTGDIDVEAE
RAMLDDGFDVSAHWLQSPHHGSRSSSSRAFLRAVGAHGVLISRGRNNAFGHPHPLVLSRYAWSGMEIHDSAEQGAITLQV
GAYEEARAERRTRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=755590 OKW98_RS09545 WP_265388933.1 2115619..2117835(+) (comA) [Pseudomonas sp. KU26590]
ATGCGCACAGGGATGCTCGCGCTTGCACTCGGATTGCTGACGTTGCGTTTTCTGCCGGCATTACCGCCGGTCTGGTTGCT
GCTGATGATGCCCGTGGTCGCGCTGATGCTGCTGCCGTTTCGTACCTACCCGCTGGCGTTTTACCTGTTCGGCCTGGCCT
GGGCCTGTGTGTCCGCGTCGTCGGCGCTGGACGATCGACTGGCCGAGCGCCTCGATGGGCAAACGCTCTGGCTGGAAGGG
CGCGTCATCGGGCTACCGCAGACGATCGACGGCGTGGTGCGTTTTCAGCTGGAGGATCCTGTTTCACGACGGGCGCGGCT
GCCGGAGCAGATCCGCATTGGCTGGTATGGCGGCCCGCCCATCAGCAGCGGCGAACGCTGGCGTGTGGCGGTCAAGCTCA
AGCGACCCGGTGGGCTGGTCAACCCCGGCGCCTTCGATTACCAGGCATGGCTGCTGGCCCAGCGCATTGGCGCCACCGGC
ACGGTGGTGGACGGCCAGTTGCTTGAACCGGCTCTGGGCAATTGGCGCGACGGCATTCGCCAGCGCCTGCTCAGTGTGGA
TGCCCAAGGCCGACAGGGCGGGCTGGCCGCCTTGGTGCTGGGGGACGATTCCGGGCTGAGTGCCGCCGATTGGCAAGTCC
TGCAGGACACCGGGACTGTTCACTTGCTGGTCATTTCCGGGACGCACATCGGCTTGCTCGCGGGTTTGCTCTACGGCCTT
GTCGCCGGCCTGGCCCGCTGGGGTGCGTGGCCGCCGTTTTTGCCCTGGCTGCACTCGGCGTGCCTCGCGGCGTTCGCGGG
CGCGCTGGCCTATGGCGTGCTGGCAGGCTTTGAAGTGCCGGTGCAGCGGGCCGTCATCATGCTGGGGCTGGTGCTGCTCT
GGCGTCTGCGTTTTCGCCAGCTGGGCACCACGTGGCCACTGTTGCTGGCGCTGAATCTGGTGCTGATCGCCGAGCCGCTG
GTCACGTTGCGGCCGGGTTTCTGGCTGTCGTTTCTGGCCGTCGGCATCTTAATGCTGATCTTCAGCGGGCGACTCGGGTC
TTGGAGCTGGCTGCAAAGCTGGACCCGCGCACAGTGGCTCATCGCGCTGGGGCTGTTGCCGGTGCTGCTGGCGCTGAACT
TGCCAGTGAGCGTGAGCGGTCCGGCCGTCAATCTGCTGGCCGTACCGTGGTTGAGTCTGTTGATTTTGCCCCTGGCGTTG
CTCGGCACGCTGCTGCTGGCGATCCCGCCCCTGGGCGAAAGCCTGCTGTGGCTGGCGGGCGGCTCGATGGACGGTTTGTT
TCGCTGGCTCACGTTCATGGCCGATCTCGCTCCCGCCTGGACCGGCCCGCATGTGCCGCTGTGGGTCTGGCCATTAAGCC
TGCTCGGCGCGCTGCTGCTGTTGCTGCCCAAAGGCCTGCCCATGCGCCCGCTGGGTTGGCCCTTGCTATTGCTGTGCATC
TTCCCACCGCAGAAAGCCGTGCCCGTCGGGCAAGTCGAAGTGCTGCAACTGGACGTGGGGCAGGGCCTCGCCATTTTGCT
GCGCACCCGGGACCACGCACTGCTCTATGACGCGGGGCCGCGCTTTGGTGATTTTGATATCGGCGAGCGCGTAGTGTTGC
CGGCCATTCGCCGCGCCGGGGTCAAACGGCTGGACACGCTGCTGCTCAGTCATGCCGATTCCGACCACGCCGGTGGCGCC
GCTGCCGTTCTCAAAGGCGTGCCCGTTGCGCGGGTGCTGGCGGGCGACACAGGGCGTATGCCCGCCGAACTGTCGGCCGA
GTCCTGCCGTAACGGGGAAACATGGACGTGGGATGAGGTCACTTTCTCCACCTGGATCTGGGAGCATGCCGCCGAAGGCA
ATCAGGCCTCTTGCGTGCTCAGCGTCGAGGCCAACGGCGAGCGGCTGTTGCTCACCGGTGATATCGATGTAGAGGCAGAG
CGCGCGATGCTCGACGACGGCTTCGACGTCAGCGCTCACTGGCTGCAATCCCCCCACCACGGCAGCCGCAGCTCGTCGTC
CCGGGCTTTTTTGCGCGCTGTCGGTGCGCATGGCGTGCTGATTTCCCGAGGCCGCAATAATGCGTTCGGCCACCCGCATC
CGCTGGTGCTGTCGCGCTACGCGTGGTCCGGCATGGAGATTCACGACAGCGCCGAACAGGGTGCCATCACCTTGCAAGTG
GGCGCCTACGAAGAAGCCCGGGCTGAACGTAGGACTCGACGCTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.291

97.019

0.604
  comA Ralstonia pseudosolanacearum GMI1000

33.492

100

0.381