Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OKW98_RS09550 Genome accession   NZ_CP110644
Coordinates   2117920..2118594 (+) Length   224 a.a.
NCBI ID   WP_265388934.1    Uniprot ID   -
Organism   Pseudomonas sp. KU26590     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2112920..2123594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW98_RS09530 (OKW98_09530) - 2113079..2114011 (+) 933 WP_265388931.1 ABC transporter ATP-binding protein -
  OKW98_RS09535 (OKW98_09535) - 2114008..2114787 (+) 780 WP_065993104.1 ABC transporter permease -
  OKW98_RS09540 (OKW98_09540) - 2114944..2115465 (-) 522 WP_265388932.1 DUF2062 domain-containing protein -
  OKW98_RS09545 (OKW98_09545) comA 2115619..2117835 (+) 2217 WP_265388933.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OKW98_RS09550 (OKW98_09550) exbB 2117920..2118594 (+) 675 WP_265388934.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OKW98_RS09555 (OKW98_09555) - 2118591..2119022 (+) 432 WP_065993112.1 ExbD/TolR family protein -
  OKW98_RS09560 (OKW98_09560) lpxK 2119022..2120017 (+) 996 WP_265388935.1 tetraacyldisaccharide 4'-kinase -
  OKW98_RS09565 (OKW98_09565) - 2120035..2120220 (+) 186 WP_003174668.1 Trm112 family protein -
  OKW98_RS09570 (OKW98_09570) kdsB 2120217..2120981 (+) 765 WP_265388936.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OKW98_RS09575 (OKW98_09575) murB 2121028..2122047 (+) 1020 WP_265388937.1 UDP-N-acetylmuramate dehydrogenase -
  OKW98_RS09580 (OKW98_09580) - 2122104..2122700 (+) 597 WP_265388938.1 nucleotidyltransferase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24226.49 Da        Isoelectric Point: 7.3251

>NTDB_id=755591 OKW98_RS09550 WP_265388934.1 2117920..2118594(+) (exbB) [Pseudomonas sp. KU26590]
MWELVKSGGWMMLPIILSSIAAVGIIIERLWTLRASRITPPHLLGQVWRWIQDKQLSAEKLKELRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLATLGTIAAMAPLLGLLGTVLGMIDIFSSFTSSGMTGNAGMLAGGIGKALICTA
SGLTVAIPAIFFHRYLQSRVDELVVGMEQEAIKLVEVVQGDRDVDLTDAKPDIKAAARGEGKKK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=755591 OKW98_RS09550 WP_265388934.1 2117920..2118594(+) (exbB) [Pseudomonas sp. KU26590]
GTGTGGGAGCTGGTCAAATCAGGTGGCTGGATGATGCTGCCGATCATTTTGAGTTCCATTGCCGCCGTCGGAATCATCAT
CGAACGCCTCTGGACCCTGCGCGCCAGCCGTATCACGCCGCCGCATTTGCTCGGTCAGGTGTGGCGCTGGATTCAGGACA
AACAGCTGAGCGCCGAGAAGCTCAAGGAGCTGCGCGCCGACTCGCCGCTGGGTGAAATCCTCGCCGCCGGTCTGGCCAAT
TCCCGCCATGGTCGCGAGATAATGAAAGAGTGCATCGAGGAAGCCGCGGCCCGGGTCATTCACGAGCTCGAACGCTATCT
CGCGACCCTTGGCACCATCGCCGCCATGGCGCCGCTGCTGGGTCTGCTGGGCACCGTGCTCGGCATGATCGACATCTTCA
GCTCGTTCACCAGCAGCGGCATGACCGGCAACGCCGGCATGCTCGCGGGCGGCATCGGCAAGGCGCTGATCTGCACCGCC
TCGGGCCTGACCGTTGCCATCCCCGCGATCTTCTTCCATCGCTATCTGCAAAGCCGCGTCGACGAGCTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAACTGGTGGAAGTCGTGCAGGGCGATCGTGACGTCGACCTCACCGACGCCAAGCCCGACATCA
AGGCTGCCGCGCGTGGCGAGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.429

93.75

0.763