Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   OOZ27_RS20240 Genome accession   NZ_CP110634
Coordinates   3796718..3797875 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain MG-1     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3791718..3802875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOZ27_RS20210 (OOZ27_20210) yvyF 3791972..3792391 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  OOZ27_RS20215 (OOZ27_20215) comFC 3792464..3793186 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  OOZ27_RS20220 (OOZ27_20220) comFB 3793150..3793446 (-) 297 WP_014478130.1 late competence protein ComFB -
  OOZ27_RS20225 (OOZ27_20225) comFA 3793506..3794897 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  OOZ27_RS20230 (OOZ27_20230) fakBA 3795003..3795848 (-) 846 WP_003227986.1 DegV family protein -
  OOZ27_RS20235 (OOZ27_20235) degU 3795946..3796635 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OOZ27_RS20240 (OOZ27_20240) degS 3796718..3797875 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  OOZ27_RS20245 (OOZ27_20245) yvyE 3798092..3798745 (+) 654 WP_003227979.1 YigZ family protein -
  OOZ27_RS20250 (OOZ27_20250) tagV 3798745..3799920 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  OOZ27_RS20255 (OOZ27_20255) tagO 3799993..3801069 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  OOZ27_RS20260 (OOZ27_20260) tuaH 3801214..3802407 (-) 1194 WP_080475153.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=755532 OOZ27_RS20240 WP_003227983.1 3796718..3797875(-) (degS) [Bacillus subtilis strain MG-1]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=755532 OOZ27_RS20240 WP_003227983.1 3796718..3797875(-) (degS) [Bacillus subtilis strain MG-1]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGGTCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1