Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   OOZ27_RS20225 Genome accession   NZ_CP110634
Coordinates   3793506..3794897 (-) Length   463 a.a.
NCBI ID   WP_014481052.1    Uniprot ID   -
Organism   Bacillus subtilis strain MG-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3788506..3799897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOZ27_RS20190 (OOZ27_20190) flgL 3788678..3789574 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  OOZ27_RS20195 (OOZ27_20195) flgK 3789585..3791108 (-) 1524 WP_015714798.1 flagellar hook-associated protein FlgK -
  OOZ27_RS20200 (OOZ27_20200) flgN 3791127..3791609 (-) 483 WP_015714799.1 flagellar protein FlgN -
  OOZ27_RS20205 (OOZ27_20205) flgM 3791625..3791891 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  OOZ27_RS20210 (OOZ27_20210) yvyF 3791972..3792391 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  OOZ27_RS20215 (OOZ27_20215) comFC 3792464..3793186 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  OOZ27_RS20220 (OOZ27_20220) comFB 3793150..3793446 (-) 297 WP_014478130.1 late competence protein ComFB -
  OOZ27_RS20225 (OOZ27_20225) comFA 3793506..3794897 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  OOZ27_RS20230 (OOZ27_20230) fakBA 3795003..3795848 (-) 846 WP_003227986.1 DegV family protein -
  OOZ27_RS20235 (OOZ27_20235) degU 3795946..3796635 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OOZ27_RS20240 (OOZ27_20240) degS 3796718..3797875 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  OOZ27_RS20245 (OOZ27_20245) yvyE 3798092..3798745 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52543.49 Da        Isoelectric Point: 9.7976

>NTDB_id=755530 OOZ27_RS20225 WP_014481052.1 3793506..3794897(-) (comFA) [Bacillus subtilis strain MG-1]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=755530 OOZ27_RS20225 WP_014481052.1 3793506..3794897(-) (comFA) [Bacillus subtilis strain MG-1]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGAAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGGGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGTGCACTTGTTCAAATTGCAGGAAGAACTGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.056

100

0.981