Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   QJP97_RS02435 Genome accession   NZ_CP124374
Coordinates   515447..515923 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain AVS0578     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 510447..520923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP97_RS02415 (QJP97_02415) cah 510568..513414 (+) 2847 WP_021526504.1 calcium-binding autotransporter Cah -
  QJP97_RS02420 (QJP97_02420) - 513485..513680 (+) 196 Protein_466 DUF905 family protein -
  QJP97_RS02425 (QJP97_02425) - 513798..514616 (+) 819 WP_001234738.1 DUF932 domain-containing protein -
  QJP97_RS02430 (QJP97_02430) - 514958..515431 (+) 474 WP_001350782.1 antirestriction protein -
  QJP97_RS02435 (QJP97_02435) radC 515447..515923 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  QJP97_RS02440 (QJP97_02440) - 515986..516240 (+) 255 WP_023281719.1 DUF987 domain-containing protein -
  QJP97_RS02445 (QJP97_02445) istA 516381..517922 (+) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  QJP97_RS02450 (QJP97_02450) istB 517937..518683 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  QJP97_RS02455 (QJP97_02455) - 518956..519324 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  QJP97_RS02460 (QJP97_02460) - 519414..519791 (+) 378 WP_000854759.1 TA system toxin CbtA family protein -
  QJP97_RS02465 (QJP97_02465) - 519788..520276 (+) 489 WP_000761690.1 DUF5983 family protein -
  QJP97_RS02470 (QJP97_02470) - 520293..520469 (+) 177 WP_000839286.1 DUF957 domain-containing protein -
  QJP97_RS02475 (QJP97_02475) - 520575..520724 (+) 150 Protein_477 hypothetical protein -
  QJP97_RS27175 - 520694..520828 (+) 135 Protein_478 transcriptional regulator -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=755531 QJP97_RS02435 WP_001186774.1 515447..515923(+) (radC) [Escherichia coli strain AVS0578]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=755531 QJP97_RS02435 WP_001186774.1 515447..515923(+) (radC) [Escherichia coli strain AVS0578]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399