Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   OOZ27_RS20235 Genome accession   NZ_CP110634
Coordinates   3795946..3796635 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain MG-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3790946..3801635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOZ27_RS20200 (OOZ27_20200) flgN 3791127..3791609 (-) 483 WP_015714799.1 flagellar protein FlgN -
  OOZ27_RS20205 (OOZ27_20205) flgM 3791625..3791891 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  OOZ27_RS20210 (OOZ27_20210) yvyF 3791972..3792391 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  OOZ27_RS20215 (OOZ27_20215) comFC 3792464..3793186 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  OOZ27_RS20220 (OOZ27_20220) comFB 3793150..3793446 (-) 297 WP_014478130.1 late competence protein ComFB -
  OOZ27_RS20225 (OOZ27_20225) comFA 3793506..3794897 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  OOZ27_RS20230 (OOZ27_20230) fakBA 3795003..3795848 (-) 846 WP_003227986.1 DegV family protein -
  OOZ27_RS20235 (OOZ27_20235) degU 3795946..3796635 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OOZ27_RS20240 (OOZ27_20240) degS 3796718..3797875 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  OOZ27_RS20245 (OOZ27_20245) yvyE 3798092..3798745 (+) 654 WP_003227979.1 YigZ family protein -
  OOZ27_RS20250 (OOZ27_20250) tagV 3798745..3799920 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  OOZ27_RS20255 (OOZ27_20255) tagO 3799993..3801069 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=755531 OOZ27_RS20235 WP_003219701.1 3795946..3796635(-) (degU) [Bacillus subtilis strain MG-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=755531 OOZ27_RS20235 WP_003219701.1 3795946..3796635(-) (degU) [Bacillus subtilis strain MG-1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1