Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   OOZ27_RS18035 Genome accession   NZ_CP110634
Coordinates   3363779..3364423 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain MG-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3358779..3369423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOZ27_RS18000 (OOZ27_18000) mrpB 3359971..3360402 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  OOZ27_RS18005 (OOZ27_18005) mrpC 3360402..3360743 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  OOZ27_RS18010 (OOZ27_18010) mrpD 3360736..3362217 (+) 1482 WP_015714622.1 Na+/H+ antiporter subunit D -
  OOZ27_RS18015 (OOZ27_18015) mrpE 3362223..3362699 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  OOZ27_RS18020 (OOZ27_18020) mrpF 3362699..3362983 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  OOZ27_RS18025 (OOZ27_18025) mnhG 3362967..3363341 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  OOZ27_RS18030 (OOZ27_18030) yuxO 3363380..3363760 (-) 381 WP_015714624.1 hotdog fold thioesterase -
  OOZ27_RS18035 (OOZ27_18035) comA 3363779..3364423 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  OOZ27_RS18040 (OOZ27_18040) comP 3364504..3366816 (-) 2313 WP_144460405.1 histidine kinase Regulator
  OOZ27_RS18045 (OOZ27_18045) comX 3366832..3367053 (-) 222 WP_014114983.1 competence pheromone ComX -
  OOZ27_RS18050 (OOZ27_18050) - 3367050..3367919 (-) 870 WP_015714626.1 polyprenyl synthetase family protein -
  OOZ27_RS18055 (OOZ27_18055) degQ 3368104..3368244 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  OOZ27_RS18060 (OOZ27_18060) - 3368466..3368591 (+) 126 WP_141770195.1 hypothetical protein -
  OOZ27_RS18065 (OOZ27_18065) - 3368706..3369074 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=755524 OOZ27_RS18035 WP_003220716.1 3363779..3364423(-) (comA) [Bacillus subtilis strain MG-1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=755524 OOZ27_RS18035 WP_003220716.1 3363779..3364423(-) (comA) [Bacillus subtilis strain MG-1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTCTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1