Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OO001_RS11545 Genome accession   NZ_CP110611
Coordinates   2417505..2418011 (-) Length   168 a.a.
NCBI ID   WP_002494616.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CCSM0287     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2412505..2423011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO001_RS11505 - 2412781..2413404 (+) 624 WP_002456828.1 NDxxF motif lipoprotein -
  OO001_RS11510 - 2413624..2414001 (+) 378 WP_002437185.1 hypothetical protein -
  OO001_RS11515 - 2414302..2414892 (-) 591 WP_002456826.1 histidine phosphatase family protein -
  OO001_RS11520 - 2414913..2415545 (-) 633 WP_001830914.1 LysE family translocator -
  OO001_RS12220 - 2415708..2415797 (+) 90 Protein_2228 hypothetical protein -
  OO001_RS11525 - 2416017..2416271 (-) 255 WP_001832461.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  OO001_RS11530 - 2416493..2416753 (+) 261 WP_001830921.1 hypothetical protein -
  OO001_RS11535 - 2416867..2417039 (+) 173 Protein_2231 XRE family transcriptional regulator -
  OO001_RS11540 rpsR 2417223..2417465 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  OO001_RS11545 ssbA 2417505..2418011 (-) 507 WP_002494616.1 single-stranded DNA-binding protein Machinery gene
  OO001_RS11550 rpsF 2418034..2418330 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  OO001_RS11555 - 2418715..2419524 (+) 810 WP_002470454.1 GH25 family lysozyme -
  OO001_RS11560 - 2419598..2419789 (+) 192 WP_001831355.1 hypothetical protein -
  OO001_RS11565 ychF 2420022..2421119 (-) 1098 WP_001831336.1 redox-regulated ATPase YchF -
  OO001_RS11570 - 2421131..2421334 (-) 204 WP_001831361.1 DUF951 domain-containing protein -
  OO001_RS11575 - 2421355..2422230 (-) 876 WP_001832526.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18566.10 Da        Isoelectric Point: 4.9056

>NTDB_id=755358 OO001_RS11545 WP_002494616.1 2417505..2418011(-) (ssbA) [Staphylococcus epidermidis strain CCSM0287]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNSSNSNQSDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=755358 OO001_RS11545 WP_002494616.1 2417505..2418011(-) (ssbA) [Staphylococcus epidermidis strain CCSM0287]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTATAACAACAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATTGAT
ATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.453

100

0.655
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

63.095

0.381