Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   OMP06_RS17520 Genome accession   NZ_CP110462
Coordinates   3666910..3667650 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain RBH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3661910..3672650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP06_RS17500 (OMP06_17500) aroB 3662452..3663534 (-) 1083 WP_001194000.1 3-dehydroquinate synthase -
  OMP06_RS17505 (OMP06_17505) aroK 3663563..3664132 (-) 570 WP_000643712.1 shikimate kinase AroK -
  OMP06_RS17510 (OMP06_17510) pilQ 3664144..3666309 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  OMP06_RS17515 (OMP06_17515) pilP 3666372..3666899 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OMP06_RS17520 (OMP06_17520) pilO 3666910..3667650 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  OMP06_RS17525 (OMP06_17525) pilN 3667647..3668288 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  OMP06_RS17530 (OMP06_17530) pilM 3668288..3669346 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  OMP06_RS17535 (OMP06_17535) ponA 3669508..3672063 (+) 2556 WP_000736688.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=755021 OMP06_RS17520 WP_000076101.1 3666910..3667650(-) (pilO) [Acinetobacter baumannii strain RBH2]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=755021 OMP06_RS17520 WP_000076101.1 3666910..3667650(-) (pilO) [Acinetobacter baumannii strain RBH2]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCAAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683