Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OMP06_RS17515 Genome accession   NZ_CP110462
Coordinates   3666372..3666899 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain RBH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3661372..3671899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP06_RS17495 (OMP06_17495) - 3661561..3662436 (-) 876 WP_000218806.1 hypothetical protein -
  OMP06_RS17500 (OMP06_17500) aroB 3662452..3663534 (-) 1083 WP_001194000.1 3-dehydroquinate synthase -
  OMP06_RS17505 (OMP06_17505) aroK 3663563..3664132 (-) 570 WP_000643712.1 shikimate kinase AroK -
  OMP06_RS17510 (OMP06_17510) pilQ 3664144..3666309 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  OMP06_RS17515 (OMP06_17515) pilP 3666372..3666899 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OMP06_RS17520 (OMP06_17520) pilO 3666910..3667650 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  OMP06_RS17525 (OMP06_17525) pilN 3667647..3668288 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  OMP06_RS17530 (OMP06_17530) pilM 3668288..3669346 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=755020 OMP06_RS17515 WP_000695065.1 3666372..3666899(-) (pilP) [Acinetobacter baumannii strain RBH2]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=755020 OMP06_RS17515 WP_000695065.1 3666372..3666899(-) (pilP) [Acinetobacter baumannii strain RBH2]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCGCAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCTCTTGAAGCTTTAAATATGAAAGGGAGCATGCG
AAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATCACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714