Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OMP06_RS17390 Genome accession   NZ_CP110462
Coordinates   3639279..3640097 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain RBH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3634279..3645097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP06_RS17375 (OMP06_17375) pilE 3634496..3634921 (-) 426 WP_065086757.1 type IV pilin protein Machinery gene
  OMP06_RS17380 (OMP06_17380) pilY2 3634918..3635400 (-) 483 WP_001046413.1 type IV pilin protein Machinery gene
  OMP06_RS17385 (OMP06_17385) pilY1 3635413..3639267 (-) 3855 WP_065086758.1 PilC/PilY family type IV pilus protein Machinery gene
  OMP06_RS17390 (OMP06_17390) pilX 3639279..3640097 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OMP06_RS17395 (OMP06_17395) pilW 3640094..3641095 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  OMP06_RS17400 (OMP06_17400) pilV 3641096..3641656 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OMP06_RS17405 (OMP06_17405) fimU 3641650..3642123 (-) 474 WP_001214062.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OMP06_RS17410 (OMP06_17410) ispH 3642293..3643243 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OMP06_RS17415 (OMP06_17415) gmk 3643366..3643995 (+) 630 WP_000015938.1 guanylate kinase -
  OMP06_RS17420 (OMP06_17420) rpoZ 3644068..3644346 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OMP06_RS17425 (OMP06_17425) - 3644385..3644515 (+) 131 Protein_3400 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=755014 OMP06_RS17390 WP_000149374.1 3639279..3640097(-) (pilX) [Acinetobacter baumannii strain RBH2]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=755014 OMP06_RS17390 WP_000149374.1 3639279..3640097(-) (pilX) [Acinetobacter baumannii strain RBH2]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTAGGGCTGGCAGCGCCAACAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993