Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   OMP06_RS17380 Genome accession   NZ_CP110462
Coordinates   3634918..3635400 (-) Length   160 a.a.
NCBI ID   WP_001046413.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain RBH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3629918..3640400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP06_RS17345 (OMP06_17345) - 3630027..3631058 (+) 1032 WP_065086755.1 lipase secretion chaperone -
  OMP06_RS17350 (OMP06_17350) - 3631173..3632114 (+) 942 WP_140987273.1 triacylglycerol lipase -
  OMP06_RS17355 (OMP06_17355) rplS 3632167..3632535 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  OMP06_RS17360 (OMP06_17360) trmD 3632744..3633484 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OMP06_RS17365 (OMP06_17365) rimM 3633530..3634078 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  OMP06_RS17370 (OMP06_17370) rpsP 3634098..3634349 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  OMP06_RS17375 (OMP06_17375) pilE 3634496..3634921 (-) 426 WP_065086757.1 type IV pilin protein Machinery gene
  OMP06_RS17380 (OMP06_17380) pilY2 3634918..3635400 (-) 483 WP_001046413.1 type IV pilin protein Machinery gene
  OMP06_RS17385 (OMP06_17385) pilY1 3635413..3639267 (-) 3855 WP_065086758.1 PilC/PilY family type IV pilus protein Machinery gene
  OMP06_RS17390 (OMP06_17390) pilX 3639279..3640097 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17602.87 Da        Isoelectric Point: 8.8351

>NTDB_id=755012 OMP06_RS17380 WP_001046413.1 3634918..3635400(-) (pilY2) [Acinetobacter baumannii strain RBH2]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTRGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=755012 OMP06_RS17380 WP_001046413.1 3634918..3635400(-) (pilY2) [Acinetobacter baumannii strain RBH2]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCAGAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

39.535

100

0.425