Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   OMP06_RS17405 Genome accession   NZ_CP110462
Coordinates   3641650..3642123 (-) Length   157 a.a.
NCBI ID   WP_001214062.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain RBH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3636650..3647123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP06_RS17390 (OMP06_17390) pilX 3639279..3640097 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OMP06_RS17395 (OMP06_17395) pilW 3640094..3641095 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  OMP06_RS17400 (OMP06_17400) pilV 3641096..3641656 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OMP06_RS17405 (OMP06_17405) fimU 3641650..3642123 (-) 474 WP_001214062.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OMP06_RS17410 (OMP06_17410) ispH 3642293..3643243 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OMP06_RS17415 (OMP06_17415) gmk 3643366..3643995 (+) 630 WP_000015938.1 guanylate kinase -
  OMP06_RS17420 (OMP06_17420) rpoZ 3644068..3644346 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OMP06_RS17425 (OMP06_17425) - 3644385..3644515 (+) 131 Protein_3400 hypothetical protein -
  OMP06_RS17430 (OMP06_17430) - 3644555..3646660 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16871.45 Da        Isoelectric Point: 8.5355

>NTDB_id=755017 OMP06_RS17405 WP_001214062.1 3641650..3642123(-) (fimU) [Acinetobacter baumannii strain RBH2]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTFVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=755017 OMP06_RS17405 WP_001214062.1 3641650..3642123(-) (fimU) [Acinetobacter baumannii strain RBH2]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCATT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTTGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994