Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   LFL98_RS18455 Genome accession   NZ_CP110365
Coordinates   3522829..3523986 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain HY2-62     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3517829..3528986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS18425 (LFL98_18430) yvyF 3518082..3518501 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  LFL98_RS18430 (LFL98_18435) comFC 3518575..3519297 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  LFL98_RS18435 (LFL98_18440) comFB 3519261..3519557 (-) 297 WP_015483764.1 late competence protein ComFB -
  LFL98_RS18440 (LFL98_18445) comFA 3519617..3521008 (-) 1392 WP_277736732.1 ATP-dependent helicase ComFA Machinery gene
  LFL98_RS18445 (LFL98_18450) fakBA 3521114..3521959 (-) 846 WP_277736733.1 DegV family protein -
  LFL98_RS18450 (LFL98_18455) degU 3522057..3522746 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LFL98_RS18455 (LFL98_18460) degS 3522829..3523986 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  LFL98_RS18460 (LFL98_18465) yvyE 3524203..3524856 (+) 654 WP_003227979.1 YigZ family protein -
  LFL98_RS18465 (LFL98_18470) tagV 3524856..3526031 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  LFL98_RS18470 (LFL98_18475) tagO 3526104..3527180 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  LFL98_RS18475 (LFL98_18480) tuaH 3527324..3528517 (-) 1194 WP_080479645.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=754653 LFL98_RS18455 WP_003227983.1 3522829..3523986(-) (degS) [Bacillus subtilis strain HY2-62]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=754653 LFL98_RS18455 WP_003227983.1 3522829..3523986(-) (degS) [Bacillus subtilis strain HY2-62]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAAGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGTTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1