Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LFL98_RS18450 Genome accession   NZ_CP110365
Coordinates   3522057..3522746 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain HY2-62     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3517057..3527746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS18415 (LFL98_18420) flgN 3517237..3517719 (-) 483 WP_128993464.1 flagellar protein FlgN -
  LFL98_RS18420 (LFL98_18425) flgM 3517735..3518001 (-) 267 WP_024572695.1 flagellar biosynthesis anti-sigma factor FlgM -
  LFL98_RS18425 (LFL98_18430) yvyF 3518082..3518501 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  LFL98_RS18430 (LFL98_18435) comFC 3518575..3519297 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  LFL98_RS18435 (LFL98_18440) comFB 3519261..3519557 (-) 297 WP_015483764.1 late competence protein ComFB -
  LFL98_RS18440 (LFL98_18445) comFA 3519617..3521008 (-) 1392 WP_277736732.1 ATP-dependent helicase ComFA Machinery gene
  LFL98_RS18445 (LFL98_18450) fakBA 3521114..3521959 (-) 846 WP_277736733.1 DegV family protein -
  LFL98_RS18450 (LFL98_18455) degU 3522057..3522746 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LFL98_RS18455 (LFL98_18460) degS 3522829..3523986 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  LFL98_RS18460 (LFL98_18465) yvyE 3524203..3524856 (+) 654 WP_003227979.1 YigZ family protein -
  LFL98_RS18465 (LFL98_18470) tagV 3524856..3526031 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  LFL98_RS18470 (LFL98_18475) tagO 3526104..3527180 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=754652 LFL98_RS18450 WP_003219701.1 3522057..3522746(-) (degU) [Bacillus subtilis strain HY2-62]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=754652 LFL98_RS18450 WP_003219701.1 3522057..3522746(-) (degU) [Bacillus subtilis strain HY2-62]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACTTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1