Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LFL98_RS18430 Genome accession   NZ_CP110365
Coordinates   3518575..3519297 (-) Length   240 a.a.
NCBI ID   WP_029725992.1    Uniprot ID   -
Organism   Bacillus subtilis strain HY2-62     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3513575..3524297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS18395 (LFL98_18400) fliW 3513714..3514145 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  LFL98_RS18400 (LFL98_18405) yviE 3514166..3514741 (-) 576 WP_014481045.1 DUF6470 family protein -
  LFL98_RS18405 (LFL98_18410) flgL 3514788..3515684 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  LFL98_RS18410 (LFL98_18415) flgK 3515695..3517218 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  LFL98_RS18415 (LFL98_18420) flgN 3517237..3517719 (-) 483 WP_128993464.1 flagellar protein FlgN -
  LFL98_RS18420 (LFL98_18425) flgM 3517735..3518001 (-) 267 WP_024572695.1 flagellar biosynthesis anti-sigma factor FlgM -
  LFL98_RS18425 (LFL98_18430) yvyF 3518082..3518501 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  LFL98_RS18430 (LFL98_18435) comFC 3518575..3519297 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  LFL98_RS18435 (LFL98_18440) comFB 3519261..3519557 (-) 297 WP_015483764.1 late competence protein ComFB -
  LFL98_RS18440 (LFL98_18445) comFA 3519617..3521008 (-) 1392 WP_277736732.1 ATP-dependent helicase ComFA Machinery gene
  LFL98_RS18445 (LFL98_18450) fakBA 3521114..3521959 (-) 846 WP_277736733.1 DegV family protein -
  LFL98_RS18450 (LFL98_18455) degU 3522057..3522746 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LFL98_RS18455 (LFL98_18460) degS 3522829..3523986 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27433.73 Da        Isoelectric Point: 9.4913

>NTDB_id=754650 LFL98_RS18430 WP_029725992.1 3518575..3519297(-) (comFC) [Bacillus subtilis strain HY2-62]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=754650 LFL98_RS18430 WP_029725992.1 3518575..3519297(-) (comFC) [Bacillus subtilis strain HY2-62]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983