Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ONR73_RS02105 Genome accession   NZ_CP110364
Coordinates   422678..423550 (-) Length   290 a.a.
NCBI ID   WP_265062003.1    Uniprot ID   -
Organism   Aeromonas veronii strain C4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 417678..428550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONR73_RS02080 (ONR73_02080) secA 417699..420419 (+) 2721 WP_265062001.1 preprotein translocase subunit SecA -
  ONR73_RS02085 (ONR73_02085) mutT 420604..421008 (+) 405 WP_042053534.1 8-oxo-dGTP diphosphatase MutT -
  ONR73_RS02090 (ONR73_02090) yacG 421086..421280 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  ONR73_RS02095 (ONR73_02095) zapD 421290..422012 (-) 723 WP_005336141.1 cell division protein ZapD -
  ONR73_RS02100 (ONR73_02100) coaE 422050..422664 (-) 615 WP_265062002.1 dephospho-CoA kinase -
  ONR73_RS02105 (ONR73_02105) pilD 422678..423550 (-) 873 WP_265062003.1 A24 family peptidase Machinery gene
  ONR73_RS02110 (ONR73_02110) - 423612..424852 (-) 1241 Protein_406 type II secretion system F family protein -
  ONR73_RS02115 (ONR73_02115) pilB 425092..426798 (-) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  ONR73_RS02120 (ONR73_02120) tapA 426802..427293 (-) 492 WP_406801101.1 type IVa pilus major pilin TapA -
  ONR73_RS02125 (ONR73_02125) nadC 427608..428483 (-) 876 WP_265062005.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32226.53 Da        Isoelectric Point: 6.4820

>NTDB_id=754556 ONR73_RS02105 WP_265062003.1 422678..423550(-) (pilD) [Aeromonas veronii strain C4]
MTLLLELTHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRGYFSPDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSLAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLVGDFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=754556 ONR73_RS02105 WP_265062003.1 422678..423550(-) (pilD) [Aeromonas veronii strain C4]
ATGACACTTCTTCTCGAGCTGACTCACGGCTTGCCTTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTCAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCGCGGCTACTTTT
CCCCCGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTTGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACAGCCCTGCTCTCGCTCGCCGTAGCCATGGTCATAACCCCGGGCTGGGGCA
CGCTGGCCGCCCTGCTGCTGACCTGGGTGCTAGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCCCTGCTGTGGGGTGGGCTGCTGTTTAACCTGGTAGGCGACTTCGTGCCGCTGGCGGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTCACTGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGTGCCGTGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAACCCATTCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCGACCCTGCTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

61.189

98.621

0.603
  pilD Vibrio campbellii strain DS40M4

56.098

98.966

0.555
  pilD Acinetobacter baumannii D1279779

54.851

92.414

0.507
  pilD Acinetobacter nosocomialis M2

54.851

92.414

0.507
  pilD Neisseria gonorrhoeae MS11

49.248

91.724

0.452