Detailed information NTG0754240

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PALA35_RS25585
• Genome accession: NZ_CP110346
• Coordinates: 5500215..5501087 (+)
• Length: 290 a.a.
• NCBI ID: WP_269974492.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PALA35
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5495215..5506087

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA35_RS25570 (PALA35_05060)	-	5496598..5497062 (-)	465	WP_124089607.1	pilin	-
PALA35_RS25575 (PALA35_05061)	pilB	5497293..5498993 (+)	1701	WP_269974490.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PALA35_RS25580 (PALA35_05062)	pilC	5498997..5500214 (+)	1218	WP_269974491.1	type II secretion system F family protein	Machinery gene
PALA35_RS25585 (PALA35_05063)	pilD	5500215..5501087 (+)	873	WP_269974492.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PALA35_RS25590 (PALA35_05064)	coaE	5501084..5501695 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
PALA35_RS25595 (PALA35_05065)	yacG	5501692..5501892 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PALA35_RS25600 (PALA35_05066)	-	5501929..5502138 (-)	210	WP_003094660.1	hypothetical protein	-
PALA35_RS25605 (PALA35_05067)	-	5502244..5502933 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
PALA35_RS25610 (PALA35_05068)	-	5502930..5503400 (-)	471	WP_269974493.1	FAD/FMN-containing dehydrogenase	-
PALA35_RS25615 (PALA35_05069)	-	5503397..5503822 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
PALA35_RS25620 (PALA35_05070)	-	5503955..5504584 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PALA35_RS25625 (PALA35_05071)	-	5504581..5505030 (+)	450	WP_237504982.1	MOSC domain-containing protein	-
PALA35_RS25630 (PALA35_05072)	-	5505056..5505226 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31797.81 Da
• Isoelectric Point: 7.3860

>NTDB_id=754240 PALA35_RS25585 WP_269974492.1 5500215..5501087(+) (pilD) [Pseudomonas aeruginosa strain PALA35]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=754240 PALA35_RS25585 WP_269974492.1 5500215..5501087(+) (pilD) [Pseudomonas aeruginosa strain PALA35]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.071	96.552	0.541
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472