Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   OM992_RS19550 Genome accession   NZ_CP110268
Coordinates   3776350..3776469 (+) Length   39 a.a.
NCBI ID   WP_045926593.1    Uniprot ID   -
Organism   Bacillus siamensis strain YB-1631     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3771350..3781469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS19530 (OM992_19530) - 3771841..3772209 (+) 369 Protein_3790 bacteriocin biosynthesis protein AlbG -
  OM992_RS19535 (OM992_19535) - 3772219..3773595 (-) 1377 WP_264819309.1 YncE family protein -
  OM992_RS19540 (OM992_19540) - 3773635..3774990 (-) 1356 WP_264819310.1 YncE family protein -
  OM992_RS19545 (OM992_19545) rapF 3775221..3776366 (+) 1146 WP_082083396.1 tetratricopeptide repeat protein Regulator
  OM992_RS19550 (OM992_19550) phrF 3776350..3776469 (+) 120 WP_045926593.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  OM992_RS19555 (OM992_19555) speB 3776584..3777456 (-) 873 WP_264819312.1 agmatinase -
  OM992_RS19560 (OM992_19560) speE 3777516..3778346 (-) 831 WP_264819313.1 spermidine synthase -
  OM992_RS19565 (OM992_19565) - 3778546..3780618 (+) 2073 WP_264819314.1 transglycosylase domain-containing protein -
  OM992_RS19570 (OM992_19570) - 3780643..3781074 (-) 432 WP_264819315.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4280.13 Da        Isoelectric Point: 8.0195

>NTDB_id=753701 OM992_RS19550 WP_045926593.1 3776350..3776469(+) (phrF) [Bacillus siamensis strain YB-1631]
MKLKYKLVLTCLAIGTVFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=753701 OM992_RS19550 WP_045926593.1 3776350..3776469(+) (phrF) [Bacillus siamensis strain YB-1631]
ATGAAATTGAAGTATAAATTAGTACTTACTTGCTTAGCGATAGGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462