Detailed information NTG0753700

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: OM992_RS19545
• Genome accession: NZ_CP110268
• Coordinates: 3775221..3776366 (+)
• Length: 381 a.a.
• NCBI ID: WP_082083396.1
• Uniprot ID: -
• Organism: Bacillus siamensis strain YB-1631
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3770221..3781366

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OM992_RS19525 (OM992_19525)	-	3771259..3771687 (-)	429	WP_045926590.1	DUF1934 domain-containing protein	-
OM992_RS19530 (OM992_19530)	-	3771841..3772209 (+)	369	Protein_3790	bacteriocin biosynthesis protein AlbG	-
OM992_RS19535 (OM992_19535)	-	3772219..3773595 (-)	1377	WP_264819309.1	YncE family protein	-
OM992_RS19540 (OM992_19540)	-	3773635..3774990 (-)	1356	WP_264819310.1	YncE family protein	-
OM992_RS19545 (OM992_19545)	rapF	3775221..3776366 (+)	1146	WP_082083396.1	tetratricopeptide repeat protein	Regulator
OM992_RS19550 (OM992_19550)	phrF	3776350..3776469 (+)	120	WP_045926593.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
OM992_RS19555 (OM992_19555)	speB	3776584..3777456 (-)	873	WP_264819312.1	agmatinase	-
OM992_RS19560 (OM992_19560)	speE	3777516..3778346 (-)	831	WP_264819313.1	spermidine synthase	-
OM992_RS19565 (OM992_19565)	-	3778546..3780618 (+)	2073	WP_264819314.1	transglycosylase domain-containing protein	-
OM992_RS19570 (OM992_19570)	-	3780643..3781074 (-)	432	WP_264819315.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45556.70 Da
• Isoelectric Point: 4.6393

>NTDB_id=753700 OM992_RS19545 WP_082083396.1 3775221..3776366(+) (rapF) [Bacillus siamensis strain YB-1631]
MASVVSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELASLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVTDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAKEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFNFLKDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=753700 OM992_RS19545 WP_082083396.1 3775221..3776366(+) (rapF) [Bacillus siamensis strain YB-1631]
GTGGCGAGTGTTGTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTATATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAAGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGCCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAGTATCTTTCAGCCATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCACAGATTGTATTGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGGCTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCTATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTTCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGGCAATATCATGACAAAGGGGTATCTTACGCGAAGG
AGGCGGAAGATTCATTATATATAGTGGAGTATGAATTTTTAGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTAACTTCCTCAAGGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
CCACGAGAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAAGTGGAAGAAACAAGACAGCAAATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	77.953	100	0.78
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572