Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   UKS_RS07205 Genome accession   NZ_AP021887
Coordinates   1419160..1421118 (-) Length   652 a.a.
NCBI ID   WP_156012361.1    Uniprot ID   A0A6H3SF69
Organism   Streptococcus sp. 116-D4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1414160..1426118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS07190 (UKS_13830) - 1415955..1417121 (-) 1167 WP_156012356.1 MalY/PatB family protein -
  UKS_RS07195 (UKS_13840) - 1417129..1418223 (-) 1095 WP_156012358.1 cystathionine gamma-synthase -
  UKS_RS07200 (UKS_13850) - 1418388..1418843 (-) 456 WP_156012360.1 hypothetical protein -
  UKS_RS07205 (UKS_13870) amiA 1419160..1421118 (-) 1959 WP_156012361.1 peptide ABC transporter substrate-binding protein Regulator
  UKS_RS07210 (UKS_13880) - 1421314..1422936 (-) 1623 WP_156012363.1 polysaccharide biosynthesis protein -
  UKS_RS07215 (UKS_13890) - 1423042..1424487 (+) 1446 WP_156012365.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  UKS_RS07220 (UKS_13900) - 1424530..1424721 (-) 192 WP_049496650.1 CsbD family protein -
  UKS_RS07225 (UKS_13910) - 1424823..1425473 (-) 651 WP_156012367.1 DUF1803 domain-containing protein -
  UKS_RS07230 (UKS_13920) - 1425457..1425969 (-) 513 WP_156012369.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72638.88 Da        Isoelectric Point: 4.8130

>NTDB_id=75366 UKS_RS07205 WP_156012361.1 1419160..1421118(-) (amiA) [Streptococcus sp. 116-D4]
MKMSKAKYATLAGVVLGAGIMLSACGNSASSSKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDMKWYTSEEEEYAPVTAQDFVTGLKYAADKKSEALYLVQESVAGLDDYITGKTSDFSTVGV
KALDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEFKKNPNYWDAK
NVFVDDVKLAYYDGSDQDALARNFVEGAYSYARLYPNSSSFEGIKEKNKDNIIYSLQNATSYFLNFNLDRKSYKFTSKTS
DAEKKSTQEAVLNKNFRQAINFAYDRTAYGAQSQGEDGATKILRNLVVPPNFVSINGKDFGEVVASKMVNYGKEWQGINF
ADAQDPYYNAEKAKAKFAEAKKELQAKGVQFPIHLDMTVDQAAKKGVQEANSMKQSIEAALGAENVVIDIQQLSTEDFDN
TSYLAQTAAQKDYDLYNGGWSADYQDPSSYLDIFNINSGGVLQNLGLEPGEANDKAKAVGLDVYTQMLEEANKEQDPAKR
YEKYADAQAWLVDSSLAIPNVSLGGTPTLRKTVPFSSPYSLAGNKGVESYKYLKVQDKTVTKDEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=75366 UKS_RS07205 WP_156012361.1 1419160..1421118(-) (amiA) [Streptococcus sp. 116-D4]
ATGAAAATGTCTAAGGCAAAGTATGCAACTCTGGCAGGTGTCGTGTTAGGCGCAGGTATTATGTTGAGTGCATGTGGGAA
TTCAGCTAGTTCATCTAAAACATACAACTATGTTTATTCTAGCGATCCATCTAGTTTGAACTATCTAGCAGAAAACCGTG
CAACGACCAATGATATTGTGACTAATCTGGTAGATGGTCTCATGGAAAATGACCAATACGGTAACTACGTTCCATCCTTA
GCAGAGGATTGGACTGTTTCTCAGGATGGTTTGACCTATACCTACAAACTTCGTAAGGATATGAAGTGGTATACTTCAGA
AGAGGAAGAATATGCTCCTGTAACTGCCCAAGATTTTGTCACTGGTTTGAAATATGCGGCTGATAAAAAATCAGAAGCCT
TGTACTTAGTGCAAGAATCCGTTGCTGGTTTAGATGACTATATCACTGGTAAAACAAGCGACTTTTCAACTGTCGGAGTT
AAGGCTCTTGATGACCAAACTGTTCAATATACCTTGACACGACCAGAATCTTATTGGAACTCAAAAACAACTTCAACCAT
TCTCTTCCCAGTCAATGCAGATTTCTTGAAATCAAAAGGGGATGATTTTGGGAAGGTAGACCCATCTAGCATTTTGTATA
ATGGACCTTTCTTGATGAAATCCTTTGTTTCAAAATCTGTCATCGAATTCAAGAAAAATCCTAACTACTGGGATGCTAAA
AATGTCTTTGTAGATGATGTCAAATTGGCCTATTATGATGGTAGTGACCAAGATGCACTGGCTCGTAACTTTGTCGAGGG
GGCTTATAGCTACGCTCGTCTTTATCCAAATAGTTCAAGCTTTGAAGGGATTAAAGAAAAGAATAAGGACAATATCATCT
ATAGCTTGCAAAATGCAACTTCTTACTTCTTAAACTTCAATTTAGATAGAAAATCTTATAAATTCACTTCAAAAACAAGT
GATGCTGAAAAGAAATCGACTCAGGAAGCGGTTCTTAACAAAAACTTTCGTCAAGCCATCAACTTTGCCTATGACCGTAC
AGCTTACGGGGCTCAATCTCAGGGAGAAGATGGTGCAACTAAGATTTTGCGTAACTTGGTTGTTCCTCCAAACTTTGTAA
GTATCAACGGAAAAGACTTTGGTGAAGTAGTAGCCTCTAAGATGGTCAATTATGGTAAGGAATGGCAAGGAATCAACTTT
GCAGATGCTCAAGATCCATACTACAATGCTGAAAAAGCCAAGGCTAAATTTGCTGAAGCTAAGAAAGAACTCCAAGCTAA
AGGAGTCCAATTCCCTATCCACTTGGACATGACAGTTGACCAAGCTGCTAAAAAGGGTGTCCAAGAGGCAAATTCTATGA
AGCAATCTATTGAAGCAGCCTTAGGTGCAGAAAATGTTGTAATTGATATTCAACAACTTTCTACTGAAGACTTTGATAAT
ACAAGCTATTTGGCTCAGACTGCAGCTCAGAAGGATTACGATCTATACAACGGTGGCTGGAGCGCAGACTATCAAGATCC
ATCAAGCTACCTTGATATTTTTAATATTAATTCTGGTGGAGTGTTGCAAAATCTAGGTTTAGAGCCGGGTGAAGCCAATG
ACAAAGCCAAGGCTGTTGGACTAGATGTCTACACTCAAATGTTGGAAGAAGCTAATAAGGAGCAAGATCCGGCTAAACGT
TATGAAAAATATGCGGATGCCCAAGCTTGGTTGGTAGATAGCTCTCTAGCAATTCCAAATGTTTCACTAGGCGGAACACC
AACATTGAGAAAAACAGTTCCATTCTCTTCACCGTATTCATTGGCTGGTAATAAAGGGGTTGAATCATATAAATACCTCA
AAGTACAAGATAAGACAGTCACAAAAGATGAATATGAAAAAGCCAAAGAAAAATGGCTGAAAGAAAAAGAAGAATCCAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H3SF69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.47

100

0.578
  amiA3 Streptococcus thermophilus LMG 18311

56.773

100

0.572
  amiA3 Streptococcus thermophilus LMD-9

56.469

100

0.569

Multiple sequence alignment