Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   OM992_RS05855 Genome accession   NZ_CP110268
Coordinates   1112310..1112888 (+) Length   192 a.a.
NCBI ID   WP_045925287.1    Uniprot ID   A0AAI8N191
Organism   Bacillus siamensis strain YB-1631     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1107310..1117888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS21190 - 1107813..1108454 (-) 642 WP_395941030.1 methyl-accepting chemotaxis protein -
  OM992_RS21195 - 1108620..1109207 (-) 588 Protein_1085 protoglobin domain-containing protein -
  OM992_RS05840 (OM992_05840) - 1109226..1110749 (-) 1524 WP_264819946.1 FAD-dependent oxidoreductase -
  OM992_RS05845 (OM992_05845) - 1110873..1111730 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  OM992_RS05850 (OM992_05850) - 1111760..1111993 (-) 234 WP_045925286.1 IDEAL domain-containing protein -
  OM992_RS05855 (OM992_05855) comK 1112310..1112888 (+) 579 WP_045925287.1 competence protein ComK Regulator
  OM992_RS05860 (OM992_05860) - 1113034..1113405 (+) 372 WP_047476728.1 iron chaperone -
  OM992_RS05865 (OM992_05865) - 1113494..1113628 (+) 135 WP_264819948.1 hypothetical protein -
  OM992_RS05870 (OM992_05870) - 1113621..1114331 (-) 711 WP_016938306.1 YrpD family protein -
  OM992_RS05875 (OM992_05875) - 1114527..1114796 (+) 270 WP_016938305.1 excalibur calcium-binding domain-containing protein -
  OM992_RS05880 (OM992_05880) - 1114829..1115146 (-) 318 WP_016938304.1 YbjQ family protein -
  OM992_RS05885 (OM992_05885) - 1115187..1116656 (-) 1470 WP_016938303.1 sodium:solute symporter -
  OM992_RS05890 (OM992_05890) - 1116653..1116853 (-) 201 WP_003155162.1 DUF3311 domain-containing protein -
  OM992_RS05895 (OM992_05895) - 1116974..1117333 (-) 360 WP_264819949.1 hypothetical protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22301.59 Da        Isoelectric Point: 8.1411

>NTDB_id=753645 OM992_RS05855 WP_045925287.1 1112310..1112888(+) (comK) [Bacillus siamensis strain YB-1631]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKIIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=753645 OM992_RS05855 WP_045925287.1 1112310..1112888(+) (comK) [Bacillus siamensis strain YB-1631]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGATCATTGAAAAAGATTGCATTCTATATGTCAGCATGAAGCCGATTCACATCATTGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACGTATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCATGTTAAAGATTTTCAACCGACCGCATTCGATGATACAGCGGTCACATTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCTTATCATTCTTTTGAGAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATCCCGAAGCGGCAGGAATTCATGCTGTACCCGAAAGAAGAGCGGACTAAAATGATTTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

83.333

100

0.833