Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   UKS_RS06435 Genome accession   NZ_AP021887
Coordinates   1250663..1252645 (-) Length   660 a.a.
NCBI ID   WP_156012247.1    Uniprot ID   A0A6H3SJX3
Organism   Streptococcus sp. 116-D4     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1245663..1257645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS06410 (UKS_12290) - 1245891..1246730 (-) 840 WP_156012244.1 amino acid ABC transporter substrate-binding protein -
  UKS_RS06415 (UKS_12300) - 1246740..1247369 (-) 630 WP_156012245.1 amino acid ABC transporter ATP-binding protein -
  UKS_RS06420 (UKS_12310) - 1247379..1248020 (-) 642 WP_156012246.1 amino acid ABC transporter permease -
  UKS_RS06425 (UKS_12320) - 1248161..1249390 (-) 1230 WP_173020469.1 tetratricopeptide repeat protein -
  UKS_RS06430 (UKS_12330) - 1249380..1250546 (-) 1167 WP_156013063.1 AI-2E family transporter -
  UKS_RS06435 (UKS_12340) amiA3 1250663..1252645 (-) 1983 WP_156012247.1 peptide ABC transporter substrate-binding protein Regulator
  UKS_RS06440 (UKS_12350) - 1252818..1253831 (+) 1014 WP_156012248.1 lactonase family protein -
  UKS_RS06445 (UKS_12360) - 1253875..1254294 (-) 420 WP_156012249.1 F0F1 ATP synthase subunit epsilon -
  UKS_RS06450 (UKS_12370) atpD 1254305..1255711 (-) 1407 WP_156012250.1 F0F1 ATP synthase subunit beta -
  UKS_RS06455 (UKS_12380) - 1255910..1256788 (-) 879 WP_125393933.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 72824.11 Da        Isoelectric Point: 4.9742

>NTDB_id=75363 UKS_RS06435 WP_156012247.1 1250663..1252645(-) (amiA3) [Streptococcus sp. 116-D4]
MKKRIFLATGVAVLSTAVLAACSSVNANKEANKPVTYAYVFSSDPSTLDYTVSGNVSTKQVTGNVIDGLLENDQYGNLVP
SVAEDWTVSKDGSTYTYKIRQGVKWYTNEGEEYGEVKAQDFVTGLKHAADKKSQALYLVQDSIKGLDDYVNGKTTDFSTV
GVKATDDYTVVYTLNHPESFWNSKTTMGVLAPVNEDFLASKGDDFGKPTDVTSILYNGPFLLKGLTSKSSIEMTKNQNYW
DKQNVFIDDIKLSFFDGQDADSLGRGFDEGHYPAAPLFKNSANYERLKEKYKDNIVYGQQRGGVFYMSTNIDRVSYNHTA
KTSDVEKSSTKKALLNKDFRQALAFAVDRKAGISQVFGDEVGPRKLRTSFTPPTFVQVGDQTFGQVTKTELDKLDNVWKD
VSLDDAQDSLHNVDKAKAKFEAAKKTLQADGVQFPIHLDLPISSSNPDFIRQVQSYKQSIEEALGSDNVVVDIQQVSDDE
LASMTTLATSNANTDWDINAVSGWSPDFADPSTYLDVFDPTSGPSLLGTLGVAPGTDNPAIKTVGLDKYKELIDDANSEK
TDLQKRYSKYAKAQAWLTDSALVIPVHSDGAQMLVTKKVLGTGAGGWVGDKTSENSYKYLKIQDKIVTTKEMDEFRKKFA
DEKAKSNADYQKNLDRHIQD

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=75363 UKS_RS06435 WP_156012247.1 1250663..1252645(-) (amiA3) [Streptococcus sp. 116-D4]
ATGAAAAAACGTATTTTCTTAGCAACAGGAGTTGCTGTACTCTCAACAGCTGTTCTAGCAGCGTGTTCATCTGTTAATGC
TAATAAAGAAGCAAATAAACCAGTTACTTATGCCTATGTATTTTCATCAGATCCTTCGACTCTGGATTATACAGTTTCTG
GAAATGTCAGCACTAAACAGGTCACAGGTAACGTTATTGACGGTTTGCTTGAAAATGACCAATATGGGAATCTAGTACCA
TCAGTTGCAGAAGATTGGACTGTTTCCAAAGATGGTTCGACCTATACCTATAAAATCCGTCAGGGTGTCAAGTGGTATAC
CAATGAGGGAGAGGAGTATGGTGAAGTTAAGGCTCAGGATTTTGTAACTGGTCTTAAGCACGCGGCTGATAAAAAATCAC
AGGCTCTCTATTTGGTACAGGATTCTATCAAAGGATTGGATGACTATGTAAATGGGAAAACAACAGATTTCTCAACCGTA
GGCGTGAAAGCAACAGATGATTATACTGTTGTTTATACTTTGAATCATCCAGAATCTTTCTGGAATTCAAAAACGACAAT
GGGAGTCCTTGCACCAGTCAATGAAGACTTTTTAGCTTCTAAAGGAGATGATTTTGGTAAGCCAACGGATGTAACGAGCA
TTCTATACAATGGGCCTTTTCTCCTCAAAGGTCTTACATCTAAGTCTTCTATAGAAATGACCAAAAACCAAAACTATTGG
GATAAACAAAATGTCTTTATTGATGATATCAAGTTATCCTTCTTTGATGGTCAAGATGCAGACTCTCTAGGACGCGGTTT
TGATGAGGGACATTATCCAGCTGCTCCACTCTTTAAAAACTCTGCCAACTATGAACGTTTAAAAGAAAAATATAAGGATA
ATATTGTATATGGTCAACAAAGAGGTGGCGTATTCTATATGTCTACTAATATTGATCGTGTGTCATACAATCATACTGCT
AAAACAAGTGATGTAGAAAAATCCTCTACTAAGAAAGCACTTTTAAACAAAGATTTCCGTCAAGCCTTGGCTTTTGCGGT
AGATCGTAAAGCAGGGATCTCTCAAGTATTTGGTGATGAAGTAGGACCTCGTAAGTTACGTACAAGTTTTACTCCTCCAA
CATTTGTACAAGTAGGAGATCAAACATTTGGTCAAGTTACTAAGACAGAATTGGATAAATTGGATAATGTCTGGAAAGAT
GTCAGTCTTGATGATGCCCAAGATTCACTTCATAATGTAGACAAGGCTAAGGCTAAGTTTGAAGCTGCTAAGAAAACTCT
TCAAGCTGATGGAGTACAGTTCCCAATTCATTTAGATTTGCCAATTTCTTCATCAAATCCAGATTTTATTCGTCAGGTTC
AGTCTTATAAACAATCTATTGAGGAAGCGTTAGGCTCTGACAATGTAGTTGTTGATATTCAACAAGTTTCTGACGATGAA
TTGGCAAGTATGACTACTCTAGCTACTTCCAATGCAAATACTGACTGGGATATTAATGCAGTTAGTGGTTGGAGTCCAGA
CTTTGCTGATCCATCGACTTATCTAGATGTATTTGATCCAACTTCAGGTCCAAGTCTCCTCGGCACTCTTGGTGTAGCAC
CAGGAACAGACAATCCAGCCATTAAAACAGTTGGATTAGATAAATACAAAGAATTGATTGATGATGCAAATAGTGAAAAA
ACAGATCTGCAAAAACGTTATTCTAAATATGCAAAAGCTCAAGCTTGGTTAACAGACAGTGCCTTGGTTATTCCTGTACA
CTCAGACGGTGCCCAAATGCTAGTAACGAAGAAAGTTCTAGGTACTGGTGCCGGTGGTTGGGTAGGTGATAAGACCAGTG
AAAATAGCTACAAGTATCTGAAAATTCAAGATAAGATAGTCACTACTAAAGAAATGGATGAGTTCCGTAAGAAATTTGCT
GATGAAAAAGCCAAATCAAATGCTGATTATCAGAAGAACTTAGACCGTCATATTCAAGACTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H3SJX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

55.438

100

0.556
  amiA3 Streptococcus thermophilus LMG 18311

54.683

100

0.548
  amiA Streptococcus salivarius strain HSISS4

54.463

100

0.545

Multiple sequence alignment