Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   OMK57_RS17950 Genome accession   NZ_CP110264
Coordinates   3571178..3571867 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus halotolerans strain HMB20199     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3566178..3576867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMK57_RS17915 (OMK57_17915) flgN 3566360..3566842 (-) 483 WP_010332064.1 flagellar protein FlgN -
  OMK57_RS17920 (OMK57_17920) flgM 3566857..3567123 (-) 267 WP_044159458.1 flagellar biosynthesis anti-sigma factor FlgM -
  OMK57_RS17925 (OMK57_17925) - 3567203..3567622 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  OMK57_RS17930 (OMK57_17930) comFC 3567696..3568418 (-) 723 WP_044159461.1 amidophosphoribosyltransferase Machinery gene
  OMK57_RS17935 (OMK57_17935) - 3568382..3568678 (-) 297 WP_069486850.1 late competence development ComFB family protein -
  OMK57_RS17940 (OMK57_17940) comFA 3568735..3570129 (-) 1395 WP_069486849.1 ATP-dependent helicase ComFA Machinery gene
  OMK57_RS17945 (OMK57_17945) - 3570236..3571081 (-) 846 WP_059335045.1 DegV family protein -
  OMK57_RS17950 (OMK57_17950) degU 3571178..3571867 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OMK57_RS17955 (OMK57_17955) degS 3571950..3573107 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  OMK57_RS17960 (OMK57_17960) - 3573324..3573977 (+) 654 WP_044159478.1 YigZ family protein -
  OMK57_RS17965 (OMK57_17965) - 3573977..3575155 (+) 1179 WP_059292434.1 LCP family protein -
  OMK57_RS17970 (OMK57_17970) - 3575227..3576303 (-) 1077 WP_264798201.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=753595 OMK57_RS17950 WP_003219701.1 3571178..3571867(-) (degU) [Bacillus halotolerans strain HMB20199]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=753595 OMK57_RS17950 WP_003219701.1 3571178..3571867(-) (degU) [Bacillus halotolerans strain HMB20199]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1