Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   OMK57_RS17940 Genome accession   NZ_CP110264
Coordinates   3568735..3570129 (-) Length   464 a.a.
NCBI ID   WP_069486849.1    Uniprot ID   -
Organism   Bacillus halotolerans strain HMB20199     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3563735..3575129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMK57_RS17905 (OMK57_17905) flgL 3563912..3564808 (-) 897 WP_044159454.1 flagellar hook-associated protein FlgL -
  OMK57_RS17910 (OMK57_17910) flgK 3564818..3566341 (-) 1524 WP_044159457.1 flagellar hook-associated protein FlgK -
  OMK57_RS17915 (OMK57_17915) flgN 3566360..3566842 (-) 483 WP_010332064.1 flagellar protein FlgN -
  OMK57_RS17920 (OMK57_17920) flgM 3566857..3567123 (-) 267 WP_044159458.1 flagellar biosynthesis anti-sigma factor FlgM -
  OMK57_RS17925 (OMK57_17925) - 3567203..3567622 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  OMK57_RS17930 (OMK57_17930) comFC 3567696..3568418 (-) 723 WP_044159461.1 amidophosphoribosyltransferase Machinery gene
  OMK57_RS17935 (OMK57_17935) - 3568382..3568678 (-) 297 WP_069486850.1 late competence development ComFB family protein -
  OMK57_RS17940 (OMK57_17940) comFA 3568735..3570129 (-) 1395 WP_069486849.1 ATP-dependent helicase ComFA Machinery gene
  OMK57_RS17945 (OMK57_17945) - 3570236..3571081 (-) 846 WP_059335045.1 DegV family protein -
  OMK57_RS17950 (OMK57_17950) degU 3571178..3571867 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OMK57_RS17955 (OMK57_17955) degS 3571950..3573107 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  OMK57_RS17960 (OMK57_17960) - 3573324..3573977 (+) 654 WP_044159478.1 YigZ family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52847.98 Da        Isoelectric Point: 9.7290

>NTDB_id=753594 OMK57_RS17940 WP_069486849.1 3568735..3570129(-) (comFA) [Bacillus halotolerans strain HMB20199]
MQTKTSESNSLFSKELQQQLQGRHLLRTEIPFSDEIINWHIEHGYISAEVSISKNKWGYRCNRCGQNDQQYFSSYHSSGE
DKVYCRSCVMMGRVSEDVSLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFPG
IELALNLRLRVCIATPRTDVVLELAPRLKAAFQGVDISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADHTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLTRNKIPNAVK
RWIEQHVKEGRPVFLFVPSISVLEKAASCFKDMNYRTAAVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQAG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=753594 OMK57_RS17940 WP_069486849.1 3568735..3570129(-) (comFA) [Bacillus halotolerans strain HMB20199]
ATGCAGACTAAGACATCAGAATCGAACAGCCTATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTGAG
AACAGAAATCCCATTTTCTGACGAGATCATTAATTGGCATATCGAGCATGGTTATATATCTGCCGAGGTGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATGTTTCTTTATATTCGTGGTGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGATGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATTGGCATTGAATTTAAGACTGCGTGTTTGTATTGCAACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
ACTGAAGGCTGCATTTCAGGGTGTTGATATTTCAGCTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGCTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCATACTCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGCGCAAC
ACCTCCTAAAGAATTAAAAAGAAAAACATATAAAGGTGAGTTAAAATCCGTTCGCATACCGGCCAGATACCATCGGAAAC
CATTGCCTGAACCGCGTTTTCAGTGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAACAAAATCCCAAATGCGGTAAAA
AGATGGATAGAACAGCATGTGAAAGAAGGAAGGCCCGTTTTTTTATTTGTTCCTTCCATTTCTGTTTTGGAAAAGGCTGC
TTCTTGTTTTAAAGATATGAATTATCGAACAGCGGCTGTACATGCGGAAGATAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAGCAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATAGAGGCAAGAAAGCATATAAAAATAATGA
ATGAATTGGCTCTAAAAAATAAATTGATAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(121-269)

Helicase conserved C-terminal domain (Helicase_C)

(323-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.279

98.707

0.832