Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   OMK57_RS16050 Genome accession   NZ_CP110264
Coordinates   3187126..3187770 (-) Length   214 a.a.
NCBI ID   WP_024122680.1    Uniprot ID   A0A9Q6AB41
Organism   Bacillus halotolerans strain HMB20199     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3182126..3192770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMK57_RS16015 (OMK57_16015) - 3183319..3183750 (+) 432 WP_024122673.1 Na(+)/H(+) antiporter subunit B -
  OMK57_RS16020 (OMK57_16020) - 3183750..3184091 (+) 342 WP_044158938.1 Na(+)/H(+) antiporter subunit C -
  OMK57_RS16025 (OMK57_16025) - 3184084..3185565 (+) 1482 WP_069486983.1 Na+/H+ antiporter subunit D -
  OMK57_RS16030 (OMK57_16030) - 3185571..3186047 (+) 477 WP_044158941.1 Na+/H+ antiporter subunit E -
  OMK57_RS16035 (OMK57_16035) - 3186047..3186331 (+) 285 WP_024122677.1 Na(+)/H(+) antiporter subunit F1 -
  OMK57_RS16040 (OMK57_16040) mnhG 3186315..3186689 (+) 375 WP_059292644.1 monovalent cation/H(+) antiporter subunit G -
  OMK57_RS16045 (OMK57_16045) - 3186728..3187108 (-) 381 WP_069486982.1 hotdog fold thioesterase -
  OMK57_RS16050 (OMK57_16050) comA 3187126..3187770 (-) 645 WP_024122680.1 two-component system response regulator ComA Regulator
  OMK57_RS16055 (OMK57_16055) comP 3187851..3190169 (-) 2319 WP_069486981.1 sensor histidine kinase Regulator
  OMK57_RS16060 (OMK57_16060) comX 3190189..3190365 (-) 177 WP_041906074.1 competence pheromone ComX -
  OMK57_RS16065 (OMK57_16065) - 3190380..3191273 (-) 894 WP_306481639.1 polyprenyl synthetase family protein -
  OMK57_RS16070 (OMK57_16070) degQ 3191404..3191544 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  OMK57_RS16075 (OMK57_16075) - 3192005..3192373 (+) 369 WP_044158947.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24109.42 Da        Isoelectric Point: 4.6730

>NTDB_id=753588 OMK57_RS16050 WP_024122680.1 3187126..3187770(-) (comA) [Bacillus halotolerans strain HMB20199]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGDILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=753588 OMK57_RS16050 WP_024122680.1 3187126..3187770(-) (comA) [Bacillus halotolerans strain HMB20199]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGACATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCAGGACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

98.598

100

0.986